dme-mir-1000

dme-mir-1000

Changes

D. willistoni through D. grimshawi substitutions in the miR* region are all supported by trace reads.
One position in the flanking region of the D. simulans ortholog was flagged as an error:

Species

Chrom

Pos

Ref base

Type

A

C

G

T

RNAseq Total

A

C

G

T

Trace Total

Decision

Partition

droSim1

chr3R

21243759

C

3

0

0

0

0

0

0

0.385

0

0.615

13

Genomic Error

3'MOR

Corrected

dme-mir-1000

Species	Coordinate	Alignment
dm3	chr3R:21414566-21414695 -	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-
droSim1	chr3R:21243636-21243765 -	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-
droSec1	super_13:202504-202633 -	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-
droYak2	chr3R:25064545-25064667 +	---------G----A------------ATTG-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCC-------------------------------------------------------------------A-------------------G-
droEre2	scaffold_4820:6627814-6627943 +	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGTC-------------------------------------------------------------------A-------------------G-
droAna3	scaffold_13340:3670416-3670527 -	TA--------------------------------------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG----------------------------------------------------------------------------------A-------------------G-
dp4	chr2:21158113-21158302 -	TATC-----GAATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGAAGGAGAAGCTACAAAGCTACAAAGCTACGGAAAAATGCTAC------------------------------A-------------------G-
droPer1	super_3:3932619-3932791 -	TATC-----GAATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGCTACA-----------------AAGCTACGGAAAAATGCTAC------------------------------A-------------------G-
droWil1	scaffold_181130:14638697-14638859 +	TCCATC-TAA----C------------AAAA-------------G-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAG--------CGGAAAAC-------------------------------TCT-ACTTCTGATGATGATAATAATGATTCAAGTCAA-------------------A-
droVir3	scaffold_12855:6810247-6810376 -	TATATC-GTC----G-------------ATC-------------GTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAA-A-----AGCCAGAA-------------------------------------------------------------------A-------------------A-
droMoj3	scaffold_6540:25791543-25791693 +	TCTATT-AT-------------------------------------AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAGA--------AGAAATC-------------------------------TA-------------------------ATCGAGTCGACTATGCGGCATACACAGAGG-
droGri2	scaffold_14906:2964690-2964824 -	TATATT--------T------------AATC-------------GTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGC-------------------------------------------------------------------A-------------------GC