(1)
OTHER.ip
(5)
OTHER.mut
(7)
PIWI.ip
(1)
PIWI.mut
(1)
TDRD1.ip
(25)
TESTES

Sense strand
AACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCGCCATCTTTGTTCAGCTCACATTGCACAATCATGTTAATGAGACTTTATGAGTGCAGCTTCTGGTATTACTAGGAGACATACTCATACAGCAAACTTGATGATCCCTGCTGGCCCTTATAATTTTTCTGCCTCTTCTTTTTCAGTGTTTCCTGAGCCTTATATGTTTGGAGTGTTTGCTATAAACTGGGACTGG
.....................................................................................((((....))))..((.((((((((...(((((((.....)))))))...)))))))).))........................................................................................................
...................................................................................84......................................................................156............................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
........................................................................................TGTTAATGAGACTTTATGAGTGCAGC........................................................................................................................................ 26 1 13.00 13.00 7.00 - - - 3.00 - - 1.00 - - - 1.00 - - - 1.00 - - - - - - - - -
..............................................................................................................................TAGGAGACATACTCATACAGCAAACT.................................................................................................. 26 1 4.00 4.00 - - - 3.00 - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................TGAGACTTTATGAGTGCAGCTTCTGGTA................................................................................................................................ 28 1 3.00 3.00 - - - 2.00 - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................................................................................................TGGTATTACTAGGAGACATACTCATA........................................................................................................... 26 1 3.00 3.00 - - 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TAGGAGACATACTCATACAGCAAACTT................................................................................................. 27 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGAGACTTTATGAGTGCAGCTTCTGGT................................................................................................................................. 27 1 2.00 2.00 - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TATATGTTTGGAGTGTTTGCTATAAACT........ 28 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGAGCCTTATATGTTTGGAGTGTTTG................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGAGACTTTATGAGTGCAGCTTCTGt.................................................................................................................................. 26 t 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................TCATACAGCAAACTTGATGATCCCTGC..................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................................TGGGATTAAAGGCGTGTGCCGCCAaa............................................................................................................................................................................................ 26 aa 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGGTATTACTAGGAGACATACTCATACA......................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.................................TGCTGGGATTAAAGGCGTGTGCCGCCAatga.......................................................................................................................................................................................... 31 atga 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..................................................TGTGCCGCCATCTTTG........................................................................................................................................................................................ 16 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................TGTTAATGAGACTTTATGAGTGCAGCT....................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................TGCACAATCATGTTAATGAGACTTTATG................................................................................................................................................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................TGTTTGGAGTGTTTGCTATAAACTGGG..... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TTATATGTTTGGAGTGTTTGCTATAc........... 26 c 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................TAATTTTTCTGCCTCTTCTTTTTCAGT................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.......................................................CGCCATCTTTGTTCAGCTCACATTGC......................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................................................................................TAATGAGACTTTATGAGTGCAGCTTC..................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................................................................................TTATGAGTGCAGCTTCTGGTATTAC............................................................................................................................ 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -

Antisense strand
AACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCGCCATCTTTGTTCAGCTCACATTGCACAATCATGTTAATGAGACTTTATGAGTGCAGCTTCTGGTATTACTAGGAGACATACTCATACAGCAAACTTGATGATCCCTGCTGGCCCTTATAATTTTTCTGCCTCTTCTTTTTCAGTGTTTCCTGAGCCTTATATGTTTGGAGTGTTTGCTATAAACTGGGACTGG
.....................................................................................((((....))))..((.((((((((...(((((((.....)))))))...)))))))).))........................................................................................................
...................................................................................84......................................................................156............................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
..............GCCTCTGCCTCCCGAGTGCTGGGATTAttt.............................................................................................................................................................................................................. 30 ttt 3.00 0.00 - - - - - 1.00 - - - - - - - 2.00 - - - - - - - - - - -
..........CGCCTGCCTCTGCCTCCCGAGTGtt....................................................................................................................................................................................................................... 25 tt 3.00 0.00 - - - 2.00 - 1.00 - - - - - - - - - - - - - - - - - - -
....................TGCCTCCCGAGTGCTGGGATTAAAtc............................................................................................................................................................................................................ 26 tc 3.00 0.00 - 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - -
........TCCGCCTGCCTCTGCCTCCCGAag.......................................................................................................................................................................................................................... 24 ag 2.00 0.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
.................CTGCCTCCCGAGTGCTGGGATTAtaga.............................................................................................................................................................................................................. 27 taga 2.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..............GCCTCTGCCTCCCGAGTGCTGGGAtaa................................................................................................................................................................................................................. 27 taa 2.00 0.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................GCCGCCATCTTTGTTCAGCTCACATTGCA........................................................................................................................................................................ 29 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - -
....................GCCTCCCGAGTGCTGGGATTAAAcgc............................................................................................................................................................................................................ 26 cgc 2.00 0.00 - 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................GCCTCCCGAGTGCTGGGATTAAAcgt............................................................................................................................................................................................................ 26 cgt 2.00 0.00 - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........CGCCTGCCTCTGCCTCCCGAGTGCTtt..................................................................................................................................................................................................................... 27 tt 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................CTGCCTCCCGAGTGCTGGGATTAAtaa............................................................................................................................................................................................................. 27 taa 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
........................TCCCGAGTGCTGGGATTAAcc............................................................................................................................................................................................................. 21 cc 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.................CTGCCTCCCGAGTGCTGGGATTAttaa.............................................................................................................................................................................................................. 27 ttaa 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............GCCTCTGCCTCCCGAGTGCTGGGATTAtta.............................................................................................................................................................................................................. 30 tta 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................CTGCCTCCCGAGTGCTGGGATTAAAcgc............................................................................................................................................................................................................ 28 cgc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......TCCGCCTGCCTCTGCCTCCCGAaaa.......................................................................................................................................................................................................................... 25 aaa 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........CGCCTGCCTCTGCCTCCCGAGTGttat....................................................................................................................................................................................................................... 27 ttat 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................CTGCCTCCCGAGTGCTGGGATTAtta.............................................................................................................................................................................................................. 26 tta 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........CGCCTGCCTCTGCCTCCCGAtta.......................................................................................................................................................................................................................... 23 tta 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.................CTGCCTCCCGAGTGCTGGGATTAcacc.............................................................................................................................................................................................................. 27 cacc 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........CGCCTGCCTCTGCCTCCCGAGTtt........................................................................................................................................................................................................................ 24 tt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.................CTGCCTCCCGAGTGCTGGGATTAcgta.............................................................................................................................................................................................................. 27 cgta 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................CCATCTTTGTTCAGCTCACATTGCAtggc........................................................................................................................................................................ 29 tggc 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................TGCCTCCCGAGTGCTGGGATTAAAtaac............................................................................................................................................................................................................ 28 taac 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................CTCATACAGCAAAgccc.................................................................................................... 17 gccc 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............GCCTCTGCCTCCCGAGTGCTGGtaaa................................................................................................................................................................................................................... 26 taaa 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.................CTGCCTCCCGAGTGCTGGGATTAAActaa............................................................................................................................................................................................................ 29 ctaa 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................CTCCCGAGTGCTGGGATTAAAGGCGTacc....................................................................................................................................................................................................... 29 acc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................CTGCCTCCCGAGTGCTGGGATTAAAtgt............................................................................................................................................................................................................ 28 tgt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................GCCATCTTTGTTCAGCTCACATTGCA........................................................................................................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................TGCCTCCCGAGTGCTGGGATTAAAtta............................................................................................................................................................................................................ 27 tta 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................CTCATACAGCAAAgggt.................................................................................................... 17 gggt 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
....................GCCTCCCGAGTGCTGGGATTAAAcgg............................................................................................................................................................................................................ 26 cgg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................CTGCCTCCCGAGTGCTGGGATTAAtaaa............................................................................................................................................................................................................. 28 taaa 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.................CTGCCTCCCGAGTGCTGGGATTActgc.............................................................................................................................................................................................................. 27 ctgc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................CTGCCTCCCGAGTGCTGGGATtaga................................................................................................................................................................................................................ 25 taga 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.........CGCCTGCCTCTGCCTCCCGAGttt......................................................................................................................................................................................................................... 24 ttt 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................TGCCTCCCGAGTGCTGGGATTAAtta............................................................................................................................................................................................................. 26 tta 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..................TGCCTCCCGAGTGCTGGGATTAAAtagt............................................................................................................................................................................................................ 28 tagt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................GCCTCCCGAGTGCTGGGATTAAAccac............................................................................................................................................................................................................ 27 ccac 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................CCCGAGTGCTGGGATTAAAGGCGTGtggt...................................................................................................................................................................................................... 29 tggt 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................GCCTCCCGAGTGCTGGGATTAAAcact............................................................................................................................................................................................................ 27 cact 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.............TGCCTCTGCCTCCCGAGTGcct....................................................................................................................................................................................................................... 22 cct 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...................GCCTCCCGAGTGCTGGGATTAAAcggg............................................................................................................................................................................................................ 27 cggg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................GCCTCCCGAGTGCTGGGATTAAAcgtg............................................................................................................................................................................................................ 27 cgtg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........CGCCTGCCTCTGCCTCCCGAGTGCTttt..................................................................................................................................................................................................................... 28 ttt 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
........CGCCTGCCTCTGCCTCCCGAGTtaaa........................................................................................................................................................................................................................ 26 taaa 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................TGCCTCCCGAGTGCTGtc.................................................................................................................................................................................................................... 18 tc 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................CTGCCTCCCGAGTGCTGGGATTAttta.............................................................................................................................................................................................................. 27 ttta 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...................TGCCTCCCGAGTGCTGGGATTAAAtct............................................................................................................................................................................................................ 27 tct 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................CTGCCTCCCGAGTGCTGGGATTAtatt.............................................................................................................................................................................................................. 27 tatt 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................CTGCCTCCCGAGTGCTGGGATTAAActgc............................................................................................................................................................................................................ 29 ctgc 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................CTGCCTCCCGAGTGCTGGGATTAAAtta............................................................................................................................................................................................................ 28 tta 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -