(6)
OTHER.mut
(1)
OVARY
(7)
PIWI.ip
(2)
PIWI.mut
(25)
TESTES

Sense strand
TTCAGTGATCCCTGATCATGTGTGGCAGAAGCCGAACTTTGGTGGCACAGGCAAGTGGATCTCTTGAGTTTGAAGCCATCAGGGACTGAGCAAGTGTGGACGGCTTGAGCGAGCAGAGGTCCTAAGAAATTTAATTCCCAACAACCACTTGAAGGCTCACAACCATCTGTACAGCTACAGACTCACATAATTCTTTTTTTTATTTGTTTTGTTTTTGTTTTCTGAGACAGGATTTCTCTGTGTAGCCCTG


Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
......................................................................TGAAGCCATCAGGGACTGAGCAAGT........................................................................................................................................................... 25 1 18.00 18.00 10.00 5.00 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
......................................................................TGAAGCCATCAGGGACTGAGCAAGTG.......................................................................................................................................................... 26 1 8.00 8.00 - 2.00 1.00 3.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - - - -
......................................................................TGAAGCCATCAGGGACTGAGCAAG............................................................................................................................................................ 24 1 5.00 5.00 3.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................TGAAGCCATCAGGGACTGAGCAAGTGTGG....................................................................................................................................................... 29 1 5.00 5.00 5.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............TGATCATGTGTGGCAGAAGCCGAACTTTG................................................................................................................................................................................................................. 29 1 4.00 4.00 - - - - 3.00 - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................TCAGGGACTGAGCAAGTGTGGACGGC.................................................................................................................................................. 26 1 4.00 4.00 2.00 - - - - - - - - - - - - - - 2.00 - - - - - - - - - -
............................................................................CATCAGGGACTGAGCAAGTGTGGACGGC.................................................................................................................................................. 28 1 4.00 4.00 4.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................TGAAGCCATCAGGGACTGAGCAAGTGTG........................................................................................................................................................ 28 1 4.00 4.00 4.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................TGAGTTTGAAGCCATCAGGGACTGAGC............................................................................................................................................................... 27 1 3.00 3.00 - - 1.00 - - - 1.00 1.00 - - - - - - - - - - - - - - - - - -
..........................................TGGCACAGGCAAGTGGATCTCTTGA....................................................................................................................................................................................... 25 1 3.00 3.00 - - - - - 3.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................CCATCAGGGACTGAGCAAGTGTGGAC..................................................................................................................................................... 26 1 3.00 3.00 - - - - - 3.00 - - - - - - - - - - - - - - - - - - - -
............TGATCATGTGTGGCAGAAGCCGAACTTT.................................................................................................................................................................................................................. 28 1 3.00 3.00 - - 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
............TGATCATGTGTGGCAGAAGCCGAACT.................................................................................................................................................................................................................... 26 1 3.00 3.00 - - - - - - - - - 1.00 - 1.00 - - - - - - - - - 1.00 - - - -
......................................................................TGAAGCCATCAGGGACTGAGCAAGTa.......................................................................................................................................................... 26 a 2.00 18.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................CAGGGACTGAGCAAGTGTGGAC..................................................................................................................................................... 22 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
.......................................................................GAAGCCATCAGGGACTGAGCAAGTGTGG....................................................................................................................................................... 28 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TGAAGGCTCACAACCATCTGTACAGatc......................................................................... 28 atc 2.00 0.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
..................TGTGTGGCAGAAGCCGAACTTTGGTGGC............................................................................................................................................................................................................ 28 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TGAAGGCTCACAACCATCTGTACAGCat......................................................................... 28 at 2.00 0.00 - - - - - - - - 1.00 - - - - - - - - - 1.00 - - - - - - -
..........................................TGGCACAGGCAAGTGGATCTCTTGAaa..................................................................................................................................................................................... 27 aa 2.00 3.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
..............................................................................TCAGGGACTGAGCAAGTGTGGACGGCT................................................................................................................................................. 27 1 2.00 2.00 - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................TGAGTTTGAAGCCATCAGGGACT................................................................................................................................................................... 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................TGAAGCCATCAGGGACTGAGC............................................................................................................................................................... 21 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................TGGCAGAAGCCGAACTTTGGTGGC............................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............GATCATGTGTGGCAGAAGCCGAACTTT.................................................................................................................................................................................................................. 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............TGATCATGTGTGGCAGAAGCCGAACTTTGG................................................................................................................................................................................................................ 30 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................TCAGGGACTGAGCAAGTGTGGACGGCTT................................................................................................................................................ 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................AGTGTGGACGGCTTGtg............................................................................................................................................. 17 tg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...............................................................TTGAGTTTGAAGCCATCAGGGACTGAGCAA............................................................................................................................................................. 30 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TGAAGGCTCACAACCATCTGTACAGCatt........................................................................ 29 att 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...................................................................................................................................TAATTCCCAACAACCACTTGAAGGCTa............................................................................................ 27 a 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................TCAGGGACTGAGCAAGTGTGGACGGCTTG............................................................................................................................................... 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................TGAAGCCATCAGGGACTGAGCA.............................................................................................................................................................. 22 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TGAAGGCTCACAACCATCTGTACAGCgtt........................................................................ 29 gtt 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
............TGATCATGTGTGGCAGAAGCCGAAC..................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..........................................................................GCCATCAGGGACTGAGCAAGTGTGGACGGCT................................................................................................................................................. 31 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TATTTGTTTTGTTTTTGTTTTCTGAGtc...................... 28 tc 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................TGAAGGCTCACAACCATCTGTACAGCata........................................................................ 29 ata 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
............TGATCATGTGTGGCAGAAGCCGAACTT................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.......................................................................................................................................................................TGTACAGCTACAGACTCACATAATTCTTT...................................................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................ATCTCTTGAGTTTGAAGCCATCAGGGA..................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
................................................................TGAGTTTGAAGCCATCAGGGACTGAG................................................................................................................................................................ 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................GAGCGAGCAGAGGTCCTAAGAAATTT...................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.............................AGCCGAACTTTGGTGG............................................................................................................................................................................................................. 16 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TTTTTTTATTTGTTTTGTTTTTGTTTT............................. 27 3 0.33 0.33 - - - - - - - - - 0.33 - - - - - - - - - - - - - - - -
......................................................GTGGATCTCTTGAGTTTGAA................................................................................................................................................................................ 20 10 0.10 0.10 - - - - - - - - - - - - - - - - 0.10 - - - - - - - - -
....................................................................................................................................................TTGAAGGCTCACAACCATCTGTACAGCTA......................................................................... 29 16 0.06 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - 0.06
.......................................................................................................................................TCCCAACAACCACTTGAAGGCTCACAACC...................................................................................... 29 16 0.06 0.06 - - - - - - - - - - - - - 0.06 - - - - - - - - - - - -
....................................................................................................................................................TTGAAGGCTCACAACCATCTGTACAGCT.......................................................................... 28 17 0.06 0.06 - - - - - - - - 0.06 - - - - - - - - - - - - - - - - -

Antisense strand
TTCAGTGATCCCTGATCATGTGTGGCAGAAGCCGAACTTTGGTGGCACAGGCAAGTGGATCTCTTGAGTTTGAAGCCATCAGGGACTGAGCAAGTGTGGACGGCTTGAGCGAGCAGAGGTCCTAAGAAATTTAATTCCCAACAACCACTTGAAGGCTCACAACCATCTGTACAGCTACAGACTCACATAATTCTTTTTTTTATTTGTTTTGTTTTTGTTTTCTGAGACAGGATTTCTCTGTGTAGCCCTG


Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
..........................................................................................................GCGAGCAGAGGTCCTAAaa............................................................................................................................. 19 aa 2.00 0.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................CTTGAAGGCTCACAACCATCTGTACAa............................................................................. 27 a 2.00 0.00 - - - - - - - - - - - - 2.00 - - - - - - - - - - - - -
.............................................................................................................................................................................GCTACAGACTCACATAATTCTTTTTTTTA................................................ 29 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................GAGCAGAGGTCCTAAGAAATTTAATT.................................................................................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................CCATCTGTACAGCTAaaa......................................................................... 18 aaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
........................................................................................................................................................CTCACAACCATCTGTACAGCTACAaaa....................................................................... 27 aaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
............................................................................................................GCGAGCAGAGGTCCTAAGAAATTTA..................................................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................CCATCTGTACAGCTACAaaaa....................................................................... 21 aaaa 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................CACAACCATCTGTACAGCTACAgga....................................................................... 25 gga 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................ACCATCTGTACAGCTACAagaa....................................................................... 22 agaa 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................TTGAAGGCTCACAACCATCTGTACAGCaa........................................................................... 29 aa 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..................................................................................................GACGGCTTGAGCGAGCAGAGGTCCTA.............................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
....................................................................................................................................................GAAGGCTCACAACCATCTGTACAGCca........................................................................... 27 ca 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................CAACCATCTGTACAGCTACAaa....................................................................... 22 aa 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................................AAGGCTCACAACCATCTGTAaaaa............................................................................... 24 aaaa 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................TGGCACAGGCAAGTGGATCTCTTGAGTTT................................................................................................................................................................................... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................ACTTGAAGGCTCACAACCATCTGTA............................................................................... 25 11 0.09 0.09 - - - - - - - - - - - - - - - - - - - - - - - - 0.09 -
....................................................................................................................................................TTGAAGGCTCACAACCATCTGTACAGCTA......................................................................... 29 16 0.06 0.06 - - - - 0.06 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................AATTCCCAACAACCACTTGAAGGCTCA........................................................................................... 27 18 0.06 0.06 - - 0.06 - - - - - - - - - - - - - - - - - - - - - - -