| Gene: Plxnb1 | ID: uc009rrz.1_intron_0_0_chr9_108998160_f.5p | SPECIES: mm9 |
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(6) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(2) PIWI.mut |
(21) TESTES |
| GAGCTGCGGGCGGACGCCTCGCCGCGCGCATCCCGCAGGAGGGTCGGGCGGTGAGTTGCGAGACTTGGGCAGGGAAGGCGGGGTTGCAGGCGAGAGCCGCGCGCACCCAGGTGGAACGGCCCGAGGCCTCGATCCCGCTGGGCACAGGCAGCCGGAGTGGTGTCTCCGGTGGGTGGCTTCGGTCCTCAGAGTTGGGACCACACTCGCGCGCGCGAAGGCAAACTCTGGCGGCACCGCCTGTAACGCGATT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR037898(GSM510434) ovary_rep3. (ovary) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................TTGCGAGACTTGGGCAGGGAAGGCGG......................................................................................................................................................................... | 26 | 1 | 34.00 | 34.00 | 21.00 | 9.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ........................................................TGCGAGACTTGGGCAGGGAAGGCGG......................................................................................................................................................................... | 25 | 1 | 25.00 | 25.00 | 12.00 | 5.00 | 1.00 | - | - | - | 1.00 | 1.00 | - | 2.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................AGGCAAACTCTGGCGGCACCGCCTGTA........ | 27 | 1 | 8.00 | 8.00 | - | - | - | 4.00 | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | 2.00 | - | - | - | - | - | - |
| ........................................................TGCGAGACTTGGGCAGGGAAGGCGGG........................................................................................................................................................................ | 26 | 1 | 6.00 | 6.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................AGGCAAACTCTGGCGGCACCGCCTGTAt....... | 28 | t | 3.00 | 8.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................AGGCAAACTCTGGCGGCACCG.............. | 21 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................CAGGAGGGTCGGGCGGTGAGTTGC............................................................................................................................................................................................... | 24 | 1 | 3.00 | 3.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................TTGCGAGACTTGGGCAGGGAAGGCGt......................................................................................................................................................................... | 26 | t | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TGGGACCACACTCGCGCGCGCGAAGGCA.............................. | 28 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................AGGCAAACTCTGGCGGCACCGCCTGTAA....... | 28 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGGGCACAGGCAGCCGGAGTGGTGTC...................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................AAGGCAAACTCTGGCGGCACCGCCTGTA........ | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................AGGAGGGTCGGGCGGTGAct.................................................................................................................................................................................................. | 20 | ct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................CGCGCATCCCGCAGGAGGGTCGGG.......................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ................................................................................................................................................................................................................CGCGCGAAGGCAAACTCTGGCGGCAC................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................CGAAGGCAAACTCTGGCGGCACCGCCTa.......... | 28 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................AGTTGCGAGACTTGGGCAGGGAAGGC........................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................AGGCAAACTCTGGCGGCACCGCCTGTAACGC.... | 31 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................GAGCCGCGCGCACCCAGGTGGAACGGC.................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................TCCCGCAGGAGGGTCGGGCGGTGA.................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTGCGAGACTTGGGCAGGGAAG............................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................GGGACCACACTCGCGCGCGCGAAGGCA.............................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................TGCGAGACTTGGGCAGGGAAGGCG.......................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TCGCGCGCGCGAAGGCAAACTCTGGCGGC.................. | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTGCGAGACTTGGGCAGGGAAGG............................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................GGTCGGGCGGTGttt.................................................................................................................................................................................................. | 15 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...................................CAGGAGGGTCGGGCGGTGAGTTGaa.............................................................................................................................................................................................. | 25 | aa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................CGCGAAGGCAAACTCTGGCGGCACCGCCTG.......... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................AGGCAAACTCTGGCGGCACCGCCTGT......... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................GGTTGCAGGCGAGAGCCGCGCGCACCC.............................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................TCAGAGTTGGGACCACACTCGCGCGC....................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................CGAAGGCAAACTCTGGCGGCACCGCCTtt......... | 29 | tt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................AGGCAAACTCTGGCGGCACCGCCTGTAAC...... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................AGGTGGAACGGCCCGAGGCCTCt....................................................................................................................... | 23 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| GAGCTGCGGGCGGACGCCTCGCCGCGCGCATCCCGCAGGAGGGTCGGGCGGTGAGTTGCGAGACTTGGGCAGGGAAGGCGGGGTTGCAGGCGAGAGCCGCGCGCACCCAGGTGGAACGGCCCGAGGCCTCGATCCCGCTGGGCACAGGCAGCCGGAGTGGTGTCTCCGGTGGGTGGCTTCGGTCCTCAGAGTTGGGACCACACTCGCGCGCGCGAAGGCAAACTCTGGCGGCACCGCCTGTAACGCGATT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR037898(GSM510434) ovary_rep3. (ovary) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................GCTTCGGTCCTCAGAGTT......................................................... | 18 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................TCTCCGGTGGGTGGCTTCGGTCCTCA.............................................................. | 26 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .................................................................................................................................................................GTCTCCGGTGGGTGGCTTCGGTCCTC............................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................CAGGGAAGGCGGGGTTGCAGGCGA............................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............................................................................................................................................................................GCTTCGGTCCTCAGAGTTGGG...................................................... | 21 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................TGGGACCACACTCGCGCGC....................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................CTTCGGTCCTCAGAGTTGGG...................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...................................................................................................................................................................................................GACCACACTCGCGCGCGCGAAGGCAAACTC......................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................TGGCTTCGGTCCTCAGAGTT......................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................CACACTCGCGCGCGCGAAGGCAt.............................. | 23 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................GGTGTCTCCGGTGGGTGGCTTCGGTCCTCA.............................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................CGCGCGCGAAGGCAAACT.......................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................AGAGTTGGGACCACACTCGCta........................................... | 22 | ta | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................CCTCAGAGTTGGGACCACACTCGCGCGCG...................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .........................................................................................................................................................................................TCAGAGTTGGGACCACACTCGC........................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................GTCTCCGGTGGGTGGCTTCGGTCCTCA.............................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................AGAGCCGCGCGCACCCAGGTGt......................................................................................................................................... | 22 | t | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |