| Gene: Cish | ID: uc009rlc.1_intron_1_0_chr9_107202476_f | SPECIES: mm9 |
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(1) OTHER.mut |
(3) PIWI.ip |
(1) PIWI.mut |
(13) TESTES |
| GGGGGATCTGCTGTGCATAGCCAAGACGTTCTCCTACCTTCGGGAATCTGGTGAGTCTCGGGGGAGACACAGACCTTGTCCTGGGAAGTCTGTGGCAGAGCTTAGCGCTTTGGATTTGGAATCTGATTTGGGAAGCGTGGTCTTGCCCCTAAGACTGATGGTATAGATACACATCTCCAGAGAAATGTAAAAGGACACTTCATTCTGACCCACCTCGGGTTGGTGCCCTTAGGTAACTTCCACTCTGACTAGTTCTCTTTTCTACTTGCCTAGGGTGGTACTGGGGTTCTATTACAGCCAGCGAGGCCCGGCAGCACCTACAG ..................................................................................................................................................................................((((((..((..((((.((((.......(((((.....))))))))).)))).((......))......))...))))))................................................................. .............................................................................................................................................................................174................................................................................................273................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................TAGCCAAGACGTTCTCCTACCTTCGG........................................................................................................................................................................................................................................................................................ | 26 | 1 | 5.00 | 5.00 | 2.00 | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................TGGAATCTGATTTGGGAAGCGTGGT...................................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 |
| ....................................................................................................................TGGAATCTGATTTGGGAAGCGTGGTC..................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | 1.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................TGGATTTGGAATCTGATTTGGGAAGC........................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - |
| .................................................................................TGGGAAGTCTGTGGCAGAGCTTAGCGCTT..................................................................................................................................................................................................................... | 29 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................TGGGAAGTCTGTGGCAGAGCTTAGCGC....................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........TGCTGTGCATAGCCAAGACGTTCTCCT................................................................................................................................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................TAGCCAAGACGTTCTCCTACCTTCGGGAtt.................................................................................................................................................................................................................................................................................... | 30 | tt | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................TGGATTTGGAATCTGATTTGGGAAG............................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................TGTCCTGGGAAGTCTGTGGCAGAGCTTt........................................................................................................................................................................................................................... | 28 | t | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TCTGCTGTGCATAGCCAAGACGTTCTCC................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................................................................................TGGGAAGTCTGTGGCAGAGCTTAGCG........................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................TGCCCCTAAGACTGATGGTATAGATAC......................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................................................................................TAGCGCTTTGGATTTGGAATCTGATT................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........TGTGCATAGCCAAGACGTTCTCCTA............................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ........................................................................................................................................................................................ATGTAAAAGGACACTTCATTCTGACCCACCT............................................................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............................................................................................................................................TGCCCCTAAGACTGATGGTATAGATACA........................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................TGGGAAGTCTGTGGCAGAGCTTAGCGCTTT.................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TTGGAATCTGATTTGGGAAGCGTGG....................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................TGGGAAGTCTGTGGCAGAGCTTAGCGCT...................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................................................................................................TTGGAATCTGATTTGGGAAGCGTGGT...................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................CAAGACGTTCTCCTACCTTCGGGAATC................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................................................................TTGTCCTGGGAAGTCTGTGGCAGAGCTTA........................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .................................................................................TGGGAAGTCTGTGGCAGAGCTTAGC......................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| GGGGGATCTGCTGTGCATAGCCAAGACGTTCTCCTACCTTCGGGAATCTGGTGAGTCTCGGGGGAGACACAGACCTTGTCCTGGGAAGTCTGTGGCAGAGCTTAGCGCTTTGGATTTGGAATCTGATTTGGGAAGCGTGGTCTTGCCCCTAAGACTGATGGTATAGATACACATCTCCAGAGAAATGTAAAAGGACACTTCATTCTGACCCACCTCGGGTTGGTGCCCTTAGGTAACTTCCACTCTGACTAGTTCTCTTTTCTACTTGCCTAGGGTGGTACTGGGGTTCTATTACAGCCAGCGAGGCCCGGCAGCACCTACAG ..................................................................................................................................................................................((((((..((..((((.((((.......(((((.....))))))))).)))).((......))......))...))))))................................................................. .............................................................................................................................................................................174................................................................................................273................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................CATTCTGACCCACcatc.............................................................................................................. | 17 | catc | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |