| Gene: Rrp9 | ID: uc009rkb.1_intron_11_0_chr9_106386688_f | SPECIES: mm9 |
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(6) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(2) PIWI.mut |
(25) TESTES |
| CTGGGTGTCATCCGTAGCCGCCCTGCTCAATACAGACCTGGTGGCCACAGGTGGGTGGGTGCTCGGTGAGGTGGGGAGGGGGACTGTGGGTGAGCTGGTATGGGGCTTGCTTACTGACTCTCTGACCTCCAAGGCTCCCATAATGCCCGTGTGCGACTTTGGCAGTGTGGAGAGGGCTTCCGG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................CTTACTGACTCTCTGACCTCCAAG.................................................. | 24 | 1 | 28.00 | 28.00 | 10.00 | 5.00 | - | 2.00 | - | 5.00 | - | 1.00 | 2.00 | 1.00 | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................GCTTACTGACTCTCTGACCTCCAAG.................................................. | 25 | 1 | 23.00 | 23.00 | 10.00 | 1.00 | 7.00 | 1.00 | - | - | - | - | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................TGCGACTTTGGCAGTGTGGAGAGGGCT..... | 27 | 1 | 7.00 | 7.00 | - | - | - | - | 3.00 | - | 1.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................TGCGACTTTGGCAGTGTGGAGAGGGC...... | 26 | 1 | 6.00 | 6.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TAATGCCCGTGTGCGACTTTGGCAGT................. | 26 | 1 | 6.00 | 6.00 | - | - | - | - | 1.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | 1.00 | - | - |
| ....................................................................................................................................................GTGTGCGACTTTGGCAGTGTGGAGAGGGCTTCC.. | 33 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................TTGCTTACTGACTCTCTGACCTCCAAG.................................................. | 27 | 1 | 3.00 | 3.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ............................................................................................................GCTTACTGACTCTCTGACCTCCAAGa................................................. | 26 | a | 2.00 | 23.00 | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................CCCGTGTGCGACTTTGGCAGTGTGG............. | 25 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TAATGCCCGTGTGCGACTTTGGCAGc................. | 26 | c | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................TGCTCAATACAGACCTGGTGGCCAC....................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........CATCCGTAGCCGCCCTGCTCAATACAG.................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................TTGGCAGTGTGGAGAGGGCTTCC.. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGGGTGGGTGCTCGttg................................................................................................................... | 18 | ttg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................AATGCCCGTGTGCGACTTTGGCAGTGTGGAG........... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................................................................................................................................ATAATGCCCGTGTGCGACTTTGGCAGTG................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................CTTACTGACTCTCTGACCTCCAtg.................................................. | 24 | tg | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TGGCAGTGTGGAGAGGGCTTCCGGcaa | 27 | caa | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TGTGCGACTTTGGCAGTGTGGAGAGG........ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ............................................................................................................GCTTACTGACTCTCTGACCTCCAA................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................GCGACTTTGGCAGTGTGGAGAGGGCT..... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................CTTACTGACTCTCTGACCTCCAAGa................................................. | 25 | a | 1.00 | 28.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................GCGACTTTGGCAGTGTGGAGAGGGCTT.... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTGGGTGTCATCCGTAGCCGCCCTGCTCAATACAGACCTGGTGGCCACAGGTGGGTGGGTGCTCGGTGAGGTGGGGAGGGGGACTGTGGGTGAGCTGGTATGGGGCTTGCTTACTGACTCTCTGACCTCCAAGGCTCCCATAATGCCCGTGTGCGACTTTGGCAGTGTGGAGAGGGCTTCCGG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR042486(GSM539878) mouse ovaries [09-002]. (ovary) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................CTCTCTGACCTCCAAGGCTCCCATA......................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |