| Gene: Trf | ID: uc009rgi.1_intron_0_0_chr9_103106509_r.5p | SPECIES: mm9 |
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|
(6) OTHER.mut |
(1) OVARY |
(1) PIWI.ip |
(14) TESTES |
| CCCAGGACTCCTGGAAGCCTGCACTTTCCACAAACATTAAAATCCAAGAGGTGGGTTGCCACTGTGGTGGAGACAGATGCTCCCTCCCGTGGCCCATGGGCTTCTCTTGGTCTTCATGCCCTGAGGGGTTGGGGCTAACTGGTGTAGTCTTCGCTGCTGTGCCTTACCACATACACAGAGCACAAAATAAAAACGACTGCTGACTTTATATTTCCCAAACTCCATTCTTTTCTAGATATTTTCACCAGGA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037899(GSM510435) ovary_rep4. (ovary) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................AACTGGTGTAGTCTTCGCTGCTG........................................................................................... | 23 | 1 | 22.00 | 22.00 | 22.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GTGTAGTCTTCGCTGCTGTGCC....................................................................................... | 22 | 1 | 11.00 | 11.00 | 11.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................ACTGGTGTAGTCTTCGCTGCTG........................................................................................... | 22 | 1 | 10.00 | 10.00 | 10.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................GGTGTAGTCTTCGCTGCTG........................................................................................... | 19 | 1 | 8.00 | 8.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................TCTCTTGGTCTTCATGCCCTGAGGGGTTGGG..................................................................................................................... | 31 | 1 | 7.00 | 7.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................CCTTACCACATACACAGAGCACAAAATAAA........................................................... | 30 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TGTAGTCTTCGCTGCTG........................................................................................... | 17 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................TAGTCTTCGCTGCTGTGCC....................................................................................... | 19 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................CTCTTGGTCTTCATGCCCTGAGGG........................................................................................................................... | 24 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..CAGGACTCCTGGAAGCCTGC.................................................................................................................................................................................................................................... | 20 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................ACGACTGCTGACTTTAaaaa...................................... | 20 | aaaa | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................TGGTGTAGTCTTCGCTGCTGTGCC....................................................................................... | 24 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................TGCACTTTCCACAAACATTAAAATCCAAGAG........................................................................................................................................................................................................ | 31 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................CTAACTGGTGTAGTCTTCGCTGttgg.......................................................................................... | 26 | ttgg | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................CCTTACCACATACACAGAGC..................................................................... | 20 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................ACTGGTGTAGTCTTCGCTGCTGTGC........................................................................................ | 25 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................ATGCTCCCTCCCGTGGC............................................................................................................................................................. | 17 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........CCTGGAAGCCTGCACTTTC.............................................................................................................................................................................................................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................CATGCCCTGAGGGGacgt...................................................................................................................... | 18 | acgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................................................................................................................................................................ATAAAAACGACTGCTGACTTTAaaaa...................................... | 26 | aaaa | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................CTTCGCTGCTGTGCCTTACC.................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............AAGCCTGCACTTTCCACAAACATTAAAATCCAAG.......................................................................................................................................................................................................... | 34 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................AAACGACTGCTGACTTTAaa........................................ | 20 | aa | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................AGTCTTCGCTGCTGTGC........................................................................................ | 17 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................GATGCTCCCTCCCGTGGC............................................................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .............................................................................................................................................................................................AAAACGACTGCTGACTTTAa......................................... | 20 | a | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................AAACGACTGCTGACTTTAaaa....................................... | 21 | aaa | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GTGTAGTCTTCGCTGCTGTGCCTTACCACATA............................................................................. | 32 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................AACTGGTGTAGTCTTCGCTGCTGTGCC....................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................TAAAAACGACTGCTGACTTTAaa........................................ | 23 | aa | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................AAATAAAAACGACTGCTGACTTTATAaaa..................................... | 29 | aaa | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................CTAACTGGTGTAGTCTTCGCTGCT............................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TGTAGTCTTCGCTGCTGTGC........................................................................................ | 20 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................AATAAAAACGACTGCTGA............................................... | 18 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................TAACTGGTGTAGTCTTCGCTGCT............................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................AAAAACGACTGCTGAC.............................................. | 16 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TTCGCTGCTGTGCCTTACCA................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................CGACTGCTGACTTTATATTTCCaaaa............................... | 26 | aaaa | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GTGTAGTCTTCGCTGCTGTGC........................................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .........................TTCCACAAACATTAAAATCCAAGAGGTG..................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...................................................TGGGTTGCCACTGTGGTGGAGAC................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................CCTGAGGGGTTGGGGCTAAa............................................................................................................... | 20 | a | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................TAGTCTTCGCTGCTGTGC........................................................................................ | 18 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................AAAACGACTGCTGAC.............................................. | 15 | 3 | 0.67 | 0.67 | - | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................CTGGTGTAGTCTTCGC................................................................................................ | 16 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................CATTAAAATCCAAGAGG....................................................................................................................................................................................................... | 17 | 3 | 0.33 | 0.33 | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CCCAGGACTCCTGGAAGCCTGCACTTTCCACAAACATTAAAATCCAAGAGGTGGGTTGCCACTGTGGTGGAGACAGATGCTCCCTCCCGTGGCCCATGGGCTTCTCTTGGTCTTCATGCCCTGAGGGGTTGGGGCTAACTGGTGTAGTCTTCGCTGCTGTGCCTTACCACATACACAGAGCACAAAATAAAAACGACTGCTGACTTTATATTTCCCAAACTCCATTCTTTTCTAGATATTTTCACCAGGA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037899(GSM510435) ovary_rep4. (ovary) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................AGATGCTCCCTCCCGTata................................................................................................................................................................ | 19 | ata | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ......................................................................AGATGCTCCCTCCCGctat................................................................................................................................................................. | 19 | ctat | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................CAGAGCACAAAATAAAAAgc......................................................... | 20 | gc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................................................................AGATGCTCCCTCCCGTcttt................................................................................................................................................................ | 20 | cttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ........................................................................................GTGGCCCATGGGCTTCTCTTGGTCTTCA...................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ......................................................................................................................................................................................................GCTGACTTTATATTTCCCAAACTCCA.......................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .................CACTTTCCACAAACAgaca...................................................................................................................................................................................................................... | 19 | gaca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |