chr9:88493353 88493768 -
(9)
OTHER.mut 		(7)
PIWI.ip 		(2)
PIWI.mut 		(31)
TESTES

Sense strand
CAGAATTCATAACAGAAAATAACTTGATTAAAGCCTGACTCTTTTAAAAGGTATGTATGAAATCTAGATTTACATTTTTGCCAGCATACATTTTTACTGTTGGTGCAAAGAGAATCAGCTTTCCGGAAATGTACTGTTAAATAGTCCTGGCCCAACACAGCAGCTTCTCCTACTCTGGCCTTTCTAAGTTGGAGTGGCTGCAGTGAATGTAGTGAATGTACAAATTGATTGTACAAACAGTTGTGAGACGTACCGGGTCTGAACAGTGATGGACTACATCCCGAAGATGATGACCTGAAGACAGATACAGCGTCTGAGAGAAGACCATTGTGTTTAAGTGAAGTTTAAGTCTTGTTTGTTACGCAGTTCTTTCTCATAGCATGTCATGGTACCTCTTTCTGCAATGAAACCTGACC
..................................................................................(((((((((((((...((((((.........)))))).....))))))))).)))).....((.((.((....(((.(((((..((((.(((..((....))..))).))))..))))).)))......((...(((((((.....))))))).))....)).)))).......................................................................................................................................................................
.................................................................................82............................................................................................................................................................................256..............................................................................................................................................................
 Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes) 		SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014229(GSM319953)
10 dpp MILI. (mili testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes)
................................................................................................................................................................................................................................TTGATTGTACAAACAGTTGTGAGACGTA.................................................................................................................................................................... 28 3 3.00 3.00 1.33 1.33 - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................TGATTGTACAAACAGTTGTGAGACGTA.................................................................................................................................................................... 27 3 2.33 2.33 1.00 0.67 - - - - - 0.33 - - - - - - - - - 0.33 - - - - - - - - - - - - -
......................................................................................TACATTTTTACTGTTGGTGCAAAGAGA............................................................................................................................................................................................................................................................................................................... 27 3 2.33 2.33 - 0.33 1.33 - - - 0.33 - - - - - - - - - - 0.33 - - - - - - - - - - - - -
........................................................................................................................................................................................TAAGTTGGAGTGGCTGCAGTGAATt............................................................................................................................................................................................................... 25 t 2.00 0.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TGAGACGTACCGGGTCTGAACAGTGA................................................................................................................................................... 26 3 2.00 2.00 - - 0.33 - - 0.67 - - - - - - - - - - - - 0.33 - - 0.33 - 0.33 - - - - - - -
..............................................................................................TACTGTTGGTGCAAAGAGAATCAGCTT....................................................................................................................................................................................................................................................................................................... 27 3 1.67 1.67 - - - - 1.00 - 0.33 - - 0.33 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................TAGCATGTCATGGTACCTCTTTCTGC.............. 26 2 1.50 1.50 - - - 1.00 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................TGATTGTACAAACAGTTGTGAGACGTACC.................................................................................................................................................................. 29 3 1.33 1.33 - 0.67 - - - - - - - - 0.33 - - - - - - - - 0.33 - - - - - - - - - - -
...................................................................................................................................................................................CTTTCTAAGTTGGAGTGGCTGCAGTGAt................................................................................................................................................................................................................. 28 t 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................TACATTTTTACTGTTGGTGCAAAGAG................................................................................................................................................................................................................................................................................................................ 26 3 1.00 1.00 - - 0.33 - - 0.67 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................TAAAAGGTATGTATGAAATCTAGATTT......................................................................................................................................................................................................................................................................................................................................................... 27 3 1.00 1.00 - - - - 0.33 - 0.33 - - - - - - - 0.33 - - - - - - - - - - - - - - - -
........................TGATTAAAGCCTGACTCTTTTAAAAGt............................................................................................................................................................................................................................................................................................................................................................................. 27 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................TCCTACTCTGGCCTTTCTAAGTTGGt............................................................................................................................................................................................................................... 26 t 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................AATGTAGTGAATGggtc.................................................................................................................................................................................................. 17 ggtc 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TTGATTGTACAAACAGTTGTGAGACGT..................................................................................................................................................................... 27 3 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TTGATTGTACAAACAGTTGTtag......................................................................................................................................................................... 23 tag 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................TGGACTACATCCCGAAGATGATGACCTG....................................................................................................................... 28 2 1.00 1.00 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TTACTGTTGGTGCAAAGAGAATtagc......................................................................................................................................................................................................................................................................................................... 26 tagc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................TGGTGCAAAGAGAATCAGCTTTCCGGA................................................................................................................................................................................................................................................................................................. 27 2 1.00 1.00 - - - 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TGATTAAAGCCTGACTCTTTTAAAAGtg............................................................................................................................................................................................................................................................................................................................................................................ 28 tg 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGAATGTACAAATgcca........................................................................................................................................................................................... 17 gcca 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................TTTACTGTTGGTGCAAAGAGAATCAGC......................................................................................................................................................................................................................................................................................................... 27 3 1.00 1.00 - - - - - - 0.33 - - 0.33 - 0.33 - - - - - - - - - - - - - - - - - - -
.........TAACAGAAAATAACTTGATTAAAGCCTGACT........................................................................................................................................................................................................................................................................................................................................................................................ 31 3 0.67 0.67 - - - - - - - - - - - - - - - - - - - - - - - - - 0.33 - - 0.33 - -
..............................................................................................................................................................................................................................................................GGGTCTGAACAGTGATGGACTAC........................................................................................................................................... 23 3 0.67 0.67 - - - - - - - - 0.67 - - - - - - - - - - - - - - - - - - - - - -
.........TAACAGAAAATAACTTGATTAAAGCCT............................................................................................................................................................................................................................................................................................................................................................................................ 27 3 0.67 0.67 - - - - - - 0.67 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TTACTGTTGGTGCAAAGAGAATCAGCTT....................................................................................................................................................................................................................................................................................................... 28 3 0.67 0.67 - - - - 0.33 - - - - - - - - - - - - - - - 0.33 - - - - - - - - - -
......................................................................................................................................................................................TCTAAGTTGGAGTGGCTGCAGTGAAT................................................................................................................................................................................................................ 26 3 0.67 0.67 0.33 - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................TTCTAAGTTGGAGTGGCTGCAGTGA.................................................................................................................................................................................................................. 25 3 0.67 0.67 - - - - - - - - - - - - 0.33 - - - - - - - - 0.33 - - - - - - - - -
................AAATAACTTGATTAAAGCCTGACTCT...................................................................................................................................................................................................................................................................................................................................................................................... 26 3 0.67 0.67 - - 0.67 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................TTCCGGAAATGTACTGTTAAATAGTC.............................................................................................................................................................................................................................................................................. 26 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................TTTTAAAAGGTATGTATGAAATCTA.............................................................................................................................................................................................................................................................................................................................................................. 25 4 0.50 0.50 - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - -
................................................................................................CTGTTGGTGCAAAGAGAATCAGCTTTC..................................................................................................................................................................................................................................................................................................... 27 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................GCATGTCATGGTACCTCTTTCTGCAA............ 26 2 0.50 0.50 - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................CATCCCGAAGATGATGACCTGAAGACA................................................................................................................. 27 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - -
............................................TAAAAGGTATGTATGAAATCTAGATT.......................................................................................................................................................................................................................................................................................................................................................... 26 4 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................TGGTGCAAAGAGAATCAGCTTTCCGG.................................................................................................................................................................................................................................................................................................. 26 2 0.50 0.50 - - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................CGAAGATGATGACCTGAAGACAGATAC............................................................................................................ 27 3 0.33 0.33 - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TTACTGTTGGTGCAAAGAGAATCAGC......................................................................................................................................................................................................................................................................................................... 26 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.33 - - -
.......................................................................................................................................................................................................................................................................................................................................TTGTGTTTAAGTGAAGTTTAAGTCTT............................................................... 26 3 0.33 0.33 - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................TCCTACTCTGGCCTTTCTAAGTTG................................................................................................................................................................................................................................. 24 3 0.33 0.33 - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................CCGAAGATGATGACCTGAAGACAGATA............................................................................................................. 27 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................TTCTAAGTTGGAGTGGCTGCAGTGAAT................................................................................................................................................................................................................ 27 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................TGTGAGACGTACCGGGTCTGAACAGT..................................................................................................................................................... 26 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - 0.33 - - - - - - - - - -
.................................................................................................................................TGTACTGTTAAATAGTCCTGGCCCAACAC.................................................................................................................................................................................................................................................................. 29 3 0.33 0.33 - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TTTCTAAGTTGGAGTGGCTGCAGTGA.................................................................................................................................................................................................................. 26 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........TAACAGAAAATAACTTGATTAAAGCCTG........................................................................................................................................................................................................................................................................................................................................................................................... 28 3 0.33 0.33 - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGTTAAATAGTCCTGGCCCAACACAGCAGC............................................................................................................................................................................................................................................................ 30 3 0.33 0.33 - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................TACAAACAGTTGTGAGACGTACCGGGT.............................................................................................................................................................. 27 3 0.33 0.33 - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................TCTCATAGCATGTCATGGTACCTCTTT.................. 27 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................TGTACAAACAGTTGTGAGACGTACCGGGTC............................................................................................................................................................. 30 3 0.33 0.33 - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - -
.....................................................................................ATACATTTTTACTGTTGGTGCAAAGAGAATC............................................................................................................................................................................................................................................................................................................ 31 3 0.33 0.33 - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TGAATGTAGTGAATGTACAAATTGATTGTAC...................................................................................................................................................................................... 31 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.33 - - - -
.........................................................................................................................................TAAATAGTCCTGGCCCAACACAGCAGC............................................................................................................................................................................................................................................................ 27 3 0.33 0.33 - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGTTAAATAGTCCTGGCCCAACACAGC............................................................................................................................................................................................................................................................... 27 3 0.33 0.33 - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................TACATTTTTACTGTTGGTGCAAAGAGcat............................................................................................................................................................................................................................................................................................................. 29 cat 0.33 1.00 - - - - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - -
........................................................................................................................................................................................TAAGTTGGAGTGGCTGCAGTGAATGT.............................................................................................................................................................................................................. 26 3 0.33 0.33 - - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................TACCGGGTCTGAACAGTGATGGACTAC........................................................................................................................................... 27 3 0.33 0.33 - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................TTCTAAGTTGGAGTGGCTGCAGTGAA................................................................................................................................................................................................................. 26 3 0.33 0.33 - - - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................TGTGAGACGTACCGGGTCTGAACAGTG.................................................................................................................................................... 27 3 0.33 0.33 - - - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................TGATGGACTACATCCCGAAGA................................................................................................................................. 21 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.33 -
......................................................................................................................................................................................................................................................GACGTACCGGGTCTGAACAGTGATGG................................................................................................................................................ 26 3 0.33 0.33 - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TTGTACAAACAGTTGTGAGACGTACC.................................................................................................................................................................. 26 3 0.33 0.33 - - - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................TGAAGTTTAAGTCTTGTTTGTTACGCAG.................................................. 28 3 0.33 0.33 - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................TGCAGTGAATGTAGTGAATGTACAAAT............................................................................................................................................................................................... 27 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................TGTGAGACGTACCGGGTCTGAACAGTGA................................................................................................................................................... 28 3 0.33 0.33 - - - - - - - - - - - - - - - - - - 0.33 - - - - - - - - - - - -
............................................TAAAAGGTATGTATGAAATCTAGATTTA........................................................................................................................................................................................................................................................................................................................................................ 28 3 0.33 0.33 - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................TTGATTAAAGCCTGACTCTTTTAAAA............................................................................................................................................................................................................................................................................................................................................................................... 26 3 0.33 0.33 - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................AACAGTTGTGAGACGTACCGGGTCT............................................................................................................................................................ 25 3 0.33 0.33 - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................TTTTACTGTTGGTGCAAAGAGAATCA........................................................................................................................................................................................................................................................................................................... 26 3 0.33 0.33 - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................CGTACCGGGTCTGAACAGTGATGGACTA............................................................................................................................................ 28 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................CCCGAAGATGATGACCTGAAGACAGA............................................................................................................... 26 3 0.33 0.33 - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGTTAAATAGTCCTGGCCCAACACAGCAG............................................................................................................................................................................................................................................................. 29 3 0.33 0.33 - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................TCTGAGAGAAGACCATTGTGTTTAAGTGA........................................................................... 29 3 0.33 0.33 - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................GTACCGGGTCTGAACAGTGATGGACTA............................................................................................................................................ 27 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - 0.33 - - - - - -
..........................................................................................TTTTTACTGTTGGTGCAAAGAGAATC............................................................................................................................................................................................................................................................................................................ 26 3 0.33 0.33 - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - -
....................................................ATGTATGAAATCTAGATTTAC....................................................................................................................................................................................................................................................................................................................................................... 21 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - 0.33 - - - - - - - - - - -
.................................................................................................................................................................................................................................................................TCTGAACAGTGATGGACTACATCCCG..................................................................................................................................... 26 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........ATAACAGAAAATAACTTGATTAAAGCCT............................................................................................................................................................................................................................................................................................................................................................................................ 28 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.33
......................................................................................TACATTTTTACTGTTGGTGCAAAGAGAA.............................................................................................................................................................................................................................................................................................................. 28 3 0.33 0.33 - - - - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - -
......TCATAACAGAAAATAACTTGATTAAAGCCT............................................................................................................................................................................................................................................................................................................................................................................................ 30 3 0.33 0.33 - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................TACATTTTTACTGTTGGTGCAAAGAGt............................................................................................................................................................................................................................................................................................................... 27 t 0.33 1.00 - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................TACAAACAGTTGTGAGACGTACCGGG............................................................................................................................................................... 26 3 0.33 0.33 - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................CCTGACTCTTTTAAAAG.............................................................................................................................................................................................................................................................................................................................................................................. 17 4 0.25 0.25 - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................GAAGATGATGACCTGAAGACAGATAC............................................................................................................ 26 4 0.25 0.25 - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................GAAGATGATGACCTGAAGACAGATACAGC......................................................................................................... 29 4 0.25 0.25 - - - - - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................TAGCATGTCATGGTACCTCTTTCTG............... 25 4 0.25 0.25 - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................AACAGTGATGGACTAC........................................................................................................................................... 16 4 0.25 0.25 - - - - - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TTTTGCCAGCATACATTTTTACTGTT........................................................................................................................................................................................................................................................................................................................... 26 4 0.25 0.25 - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................GATGATGACCTGAAGACAGATACAG.......................................................................................................... 25 4 0.25 0.25 - - - - - - - - - - - - - 0.25 - - - - - - - - - - - - - - - - -

Antisense strand
CAGAATTCATAACAGAAAATAACTTGATTAAAGCCTGACTCTTTTAAAAGGTATGTATGAAATCTAGATTTACATTTTTGCCAGCATACATTTTTACTGTTGGTGCAAAGAGAATCAGCTTTCCGGAAATGTACTGTTAAATAGTCCTGGCCCAACACAGCAGCTTCTCCTACTCTGGCCTTTCTAAGTTGGAGTGGCTGCAGTGAATGTAGTGAATGTACAAATTGATTGTACAAACAGTTGTGAGACGTACCGGGTCTGAACAGTGATGGACTACATCCCGAAGATGATGACCTGAAGACAGATACAGCGTCTGAGAGAAGACCATTGTGTTTAAGTGAAGTTTAAGTCTTGTTTGTTACGCAGTTCTTTCTCATAGCATGTCATGGTACCTCTTTCTGCAATGAAACCTGACC
..................................................................................(((((((((((((...((((((.........)))))).....))))))))).)))).....((.((.((....(((.(((((..((((.(((..((....))..))).))))..))))).)))......((...(((((((.....))))))).))....)).)))).......................................................................................................................................................................
.................................................................................82............................................................................................................................................................................256..............................................................................................................................................................
 Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes) 		SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014229(GSM319953)
10 dpp MILI. (mili testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes)
..........................................................................................................................................................................................................................................................................................................................................................AAGTCTTGTTTGTTACGCAGTTCTTTC........................................... 27 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................GGCCCAACACAGCAGCTTCTCCTACTCTG............................................................................................................................................................................................................................................... 29 3 0.33 0.33 - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................ACCGGGTCTGAACAGTGATGGACTACA.......................................................................................................................................... 27 3 0.33 0.33 - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - -
................................................................................................................................................................CAGCTTCTCCTACTCTGGCCTTTCTAA..................................................................................................................................................................................................................................... 27 3 0.33 0.33 - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - -
.....................................ACTCTTTTAAAAGGTATGTATGAAATCTAG............................................................................................................................................................................................................................................................................................................................................................. 30 4 0.25 0.25 - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - -