| Gene: Ccpg1 | ID: uc009qqq.1_intron_8_0_chr9_72863237_f | SPECIES: mm9 |
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(4) OTHER.mut |
(6) PIWI.ip |
(2) PIWI.mut |
(22) TESTES |
| CCGAAAACAAGAGCAGAAGCACCTTCATCCACAGCCTTATGAAAGGGAAGGTAAATGGCAAAAATACGGTCGCGCTAACGGAAGACACACGGCAAATCTTGAGCTAGAACTGGGGCAGTTACCTTTCGATCCTAAGTACTGATTTGTGATTAAGTTAGGAAGTTAAGAGCTGTGGATGCTATCTACTTGGTTTGATGTTGAGATGAACTCCCCATGACTGTCTTTATATTATGCAAAAGCAAAGCTTACTAACTTGCATTTTCCTGTAGCTTAGGTTTGTTAAAAACAAAAACTTTTTTTCCTGCTGGGGGGGGGTGGGGGAAATGGTAGTTTTATTAAGGAAGCCAGGCATGAAATAGTCTGTGCATGAAACAGGGCTTGGTTTGAGGAGCTGAGCTCAGCTCACACAGGCATTTCGTGCCGTGTGGAGGTGTGCAGCAGGGCCTGAGGACTGTGCTGAGGCGGGACTCCGCGCTAACATCTCTACTCTCACGCTTTTGTCTCTCTGTGGGTTCAAGAGCCCGTTGGTTTGTGAAGAGCTGGCTGGCTTGTCTTGTGAACTCTCTTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................AAATCTTGAGCTAGAACTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 9.00 | 9.00 | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCCTGAGGACTGTGCTG............................................................................................................. | 21 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................TACGGTCGCGCTAACGGAAGACACAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 3.00 | 3.00 | - | - | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TCTTGAGCTAGAACTGGGGCAGTTACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTTGTGAAGAGCTGGCTGGCTTGT................ | 27 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................TATGAAAGGGAAGGTAAATGGCAAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TCTTGAGCTAGAACTGGGGCAGTTACCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................TGAAACAGGGCTTGGTTTGAGGAGC................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................AAAATACGGTCGCGCTAACGGAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........................................................................................................................................................GTTAGGAAGTTAAGAGCTGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................TTATGCAAAAGCAAAGCTTACTAACTTGCA...................................................................................................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGCTGAGCTCAGCTCACACAGG............................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGTGCCGTGTGGAGGTGTGCAGC................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................TATTAAGGAAGCCAGGCATGAAATAGTC............................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTTGGTTTGTGAAGAGC............................ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGTGGAGGTGTGggt.................................................................................................................................. | 18 | ggt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .......................................................................................................................................................................................TACTTGGTTTGATGctat............................................................................................................................................................................................................................................................................................................................................................................... | 18 | ctat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................GTTAAGAGCTGTGGATGCT.................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTGTGCTGAGG.......................................................................................................... | 16 | 8 | 0.50 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACTGTGCTGAG........................................................................................................... | 15 | 16 | 0.06 | 0.06 | - | - | - | - | - | - | - | - | - | - | 0.06 | - | - | - | - | - | - | - | - | - | - | - |
| CCGAAAACAAGAGCAGAAGCACCTTCATCCACAGCCTTATGAAAGGGAAGGTAAATGGCAAAAATACGGTCGCGCTAACGGAAGACACACGGCAAATCTTGAGCTAGAACTGGGGCAGTTACCTTTCGATCCTAAGTACTGATTTGTGATTAAGTTAGGAAGTTAAGAGCTGTGGATGCTATCTACTTGGTTTGATGTTGAGATGAACTCCCCATGACTGTCTTTATATTATGCAAAAGCAAAGCTTACTAACTTGCATTTTCCTGTAGCTTAGGTTTGTTAAAAACAAAAACTTTTTTTCCTGCTGGGGGGGGGTGGGGGAAATGGTAGTTTTATTAAGGAAGCCAGGCATGAAATAGTCTGTGCATGAAACAGGGCTTGGTTTGAGGAGCTGAGCTCAGCTCACACAGGCATTTCGTGCCGTGTGGAGGTGTGCAGCAGGGCCTGAGGACTGTGCTGAGGCGGGACTCCGCGCTAACATCTCTACTCTCACGCTTTTGTCTCTCTGTGGGTTCAAGAGCCCGTTGGTTTGTGAAGAGCTGGCTGGCTTGTCTTGTGAACTCTCTTG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................AGAGCTGTGGATGCTATCTACTTGGTTTGA..................................................................................................................................................................................................................................................................................................................................................................................... | 30 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................AAGCACCTTCATCCACAGCCTTATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................GAGCTGTGGATGCTATCTACTTGGTTTG...................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................AAGCACCTTCATCCACAGCCTTATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................TGGGGCAGTTACCTTTCGATCCTAAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTGTGGGTTCAAGAGCCCGTT.......................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................GAGCTGTGGATGCTATCTACTTGGTTTGA..................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............AGAAGCACCTTCATCCACAGCCTTATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................GCACCTTCATCCACAGCCTTATGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................GCAAAAATACGGTCGCGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTCTACTCTCACGCTTTTGTC.................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..................CACCTTCATCCACAGCCTTATGAAAt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................AAACAAAAACTTTTTatc.............................................................................................................................................................................................................................................................................. | 18 | atc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCCGCGCTAACATCTCTACTCTCA............................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................GCTGTGGATGCTATCTACTTGGTTTGA..................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTGAGCTCAGCTCACACAGGCATT......................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................ATGACTGTCTTTATATTATGCAAAA.......................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................CCTTCATCCACAGCCTTATGAAgg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 24 | gg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACATCTCTACTCTCACGCTTTTG.................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TACCTTTCGATCCTAAGTACTGATTTt....................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................CCTTCATCCACAGCCTTATGAAAGGGAAgt....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | gt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGCGCTAACATCTCTACTCTCA............................................................................ | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |