| Gene: Cgnl1 | ID: uc009qpc.1_intron_12_0_chr9_71563266_r.3p | SPECIES: mm9 |
|
|
(4) OTHER.mut |
(1) PIWI.ip |
(15) TESTES |
| GAAAATGTCCCCGCAAGTCTGTCCCATTTTGTTTGTTTTGAGTTCTTATCTGACATCTTGGCCGACTTAGACTGTAGTCCTAAGGAAGCTTCTTGGGGCTACAGGTGACCATGTGATAGCCTGAAAGCCTGTGGTTAGACTAGGTGAAGGCTGAGGATCCCAGGAGCCTCTCTGACAGACCTCCTGTTGTCCCCTGCCAGGCTGTTCCAAGTGAAGATGGAGCGTGAACAGCACCAGACTGAGATCAGAG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT3() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................AAGGCTGAGGATCCCAGGAG.................................................................................... | 20 | 1 | 10.00 | 10.00 | 4.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..................................................................................................................................................AAGGCTGAGGATCCCAGGAGC................................................................................... | 21 | 1 | 6.00 | 6.00 | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................AAGGCTGAGGATCCCAGGAGt................................................................................... | 21 | t | 6.00 | 10.00 | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................AGGCTGAGGATCCCAGGAG.................................................................................... | 19 | 1 | 4.00 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................CCTCCTGTTGTCCCCTGCCAG.................................................. | 21 | 1 | 4.00 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................CCTCCTGTTGTCCCCTGCCAGt................................................. | 22 | t | 3.00 | 4.00 | - | - | - | - | - | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - |
| ...................................................................................................................................................AGGCTGAGGATCCCAGGAGC................................................................................... | 20 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................AAGGCTGAGGATCCCAGGAGCaa................................................................................. | 23 | aa | 2.00 | 6.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................GAAGATGGAGCGTGAACAGCACCAGACT.......... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..................................................................................................................................................AAGGCTGAGGATCCCAGGAGCt.................................................................................. | 22 | t | 1.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..............................................................................................................................................................................................................CCAAGTGAAGATGGAGCGTGAACAGCACC............... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .............................................................................................................................................................................................................TCCAAGTGAAGATGGAGCGTGAACAGC.................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................GACATCTTGGCCGACTTAGACTGT............................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................GTGAAGATGGAGCGTGAACA.................... | 20 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................AAGGCTGAGGATCCCAGGAGCagat............................................................................... | 25 | agat | 1.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| GAAAATGTCCCCGCAAGTCTGTCCCATTTTGTTTGTTTTGAGTTCTTATCTGACATCTTGGCCGACTTAGACTGTAGTCCTAAGGAAGCTTCTTGGGGCTACAGGTGACCATGTGATAGCCTGAAAGCCTGTGGTTAGACTAGGTGAAGGCTGAGGATCCCAGGAGCCTCTCTGACAGACCTCCTGTTGTCCCCTGCCAGGCTGTTCCAAGTGAAGATGGAGCGTGAACAGCACCAGACTGAGATCAGAG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT3() Testes Data. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................TTATCTGACATCTTGtaac.............................................................................................................................................................................................. | 19 | taac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |