| Gene: Vps11 | ID: uc009pdc.1_intron_3_0_chr9_44162082_r | SPECIES: mm9 |
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(2) OTHER.mut |
(2) PIWI.ip |
(2) PIWI.mut |
(15) TESTES |
| ATCGACCCAGTCTGGAAGGCCGAGGCGATCGGGAGGCTCTGAGCTGCCGGGTGAGACCTGGGAAGCAGTTTGAGTAGCAGGGGTCACCTTAGAGGCCTGTGAGCGCTGAGCCACCTTCCTTAGCCACCATGCTTGCTTCTCCCCTCTGTCCCAGGCCAGTTCTGAGGAGTTCATCCCCATCTTTGCCAACAACCCACGAGAGCT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTGAGACCTGGGAAGCAGTTTGAGTA................................................................................................................................ | 26 | 1 | 12.00 | 12.00 | - | 4.00 | 1.00 | - | 2.00 | - | 2.00 | 1.00 | - | 1.00 | - | - | - | - | 1.00 |
| ..................................................GTGAGACCTGGGAAGCAGTTTGAGT................................................................................................................................. | 25 | 1 | 3.00 | 3.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................AGGCGATCGGGAGGCTCTGAGCTGCCGG.......................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................GAGGCGATCGGGAGGCTCTGAGCTGCCGG.......................................................................................................................................................... | 29 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................CGAGGCGATCGGGAGGCTCTGA.................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..................................................GTGAGACCTGGGAAGCAGTTTGAGTAa............................................................................................................................... | 27 | a | 1.00 | 12.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................GGCGATCGGGAGGCTCTGAGCTGCCGG.......................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......CAGTCTGGAAGGCCGA..................................................................................................................................................................................... | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGACCTGGGAAGCAGTTTGAG.................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................ATCGGGAGGCTCTGAGCTGCCGGccac...................................................................................................................................................... | 27 | ccac | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................CAGTTCTGAGGAGTTCATCCCCATC....................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGACCTGGGAAGCAGTTTGAGTAGC.............................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGACCTGGGAAGCAGTTTGAGTAG............................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGACCTGGGAAGCAGTTTGAGTAGt.............................................................................................................................. | 28 | t | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGACCTGGGAAGCAGTTTGAGTA................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................GAGGCTCTGAGCTGCCGG.......................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGACCTGGGAAGCAGTTTG.................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......CCAGTCTGGAAGGCCGAG.................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................GGCGATCGGGAGGCTCTGAGCTGCCGGG......................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............TGGAAGGCCGAGGCGATCGGGAGGCTC..................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................AGGCTCTGAGCTGCCGG.......................................................................................................................................................... | 17 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - |
| ATCGACCCAGTCTGGAAGGCCGAGGCGATCGGGAGGCTCTGAGCTGCCGGGTGAGACCTGGGAAGCAGTTTGAGTAGCAGGGGTCACCTTAGAGGCCTGTGAGCGCTGAGCCACCTTCCTTAGCCACCATGCTTGCTTCTCCCCTCTGTCCCAGGCCAGTTCTGAGGAGTTCATCCCCATCTTTGCCAACAACCCACGAGAGCT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................AGGCCTGTGAGCGCTGAGCCACCTTCCT.................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................GCGATCGGGAGGCgc....................................................................................................................................................................... | 15 | gc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |