| Gene: Foxred1 | ID: uc009ost.1_intron_8_0_chr9_35017115_r | SPECIES: mm9 |
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(3) OTHER.mut |
(2) PIWI.ip |
(1) TDRD1.ip |
(15) TESTES |
| AGAGTAGAAGAGGTGCCATTCGGGTGCTGGTGGTGGAGCAGGACCACACGGTGAGGTCAGGGAGTAAGGGCAGTCATCTTATTGAGGACACAGACTGTGGCATTGAGGGCAGGGACTGTGCTTTGGACTTTGGAGCTTAAGAAATAGTTCCAGGCTCTTCCTCCCTCAACAAAGACCCGCAGCAATAACATTGTTTTGTTGGGGAAGGGGAAGAGACTTTGCTACTGTTGTTTAATCTCTTTGGAGATGGGGTTTCAATATATGGCTGAAGCTGGCCCTGAACTCAGCATTTTCCATTCTGTGCCTCCCAAGTGCTCCGATTACACGTGCTCCAGAACATTTACCCATACTTGCTCCTTGAAAAATGATTCCCCTTTGCATTTAAATGTATAACTGACAGCTTCCATTGCAGGATTCCATTATATATTACATCATGACAGTCTACGTCGGTTTTTCTTTTCACAGTATTCACGGGCTTCCTCCACAGGGCCTTCTGTGGGCGGGATTTGGCAGCA .......................................................................................................................................................((((((((((((((((((((((........(((((...)))))))))))))))..))))))))).))).....(((..((.........((((((.(((((...((....((((..((.(((((........))))).))..))))....))..)))))....))))))........))..))).................................................................................................................................................................................... ......................................................................................................................................................151..................................................................................................................................................................................................348..................................................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................................................................................................ATTCTGTGCCTCCCAAGTGCTCCGATTACACGTGCTCCAGAACATTTACCCA........................................................................................................................................................................ | 52 | 1 | 34.00 | 34.00 | 34.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGAGGACACAGACTGTGGCATTGAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 11.00 | 11.00 | - | 11.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGAGGACACAGACTGTGGCATTGAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................CACAGACTGTGGCATTGAGGGCAGGGACTGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................... | 33 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCCTTCTGTGGGCGG............ | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCGGGATTTGGCAGCA | 21 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGCAGGATTCCATa.............................................................................................. | 18 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .......................................................................................................................................................................................................................................TTAATCTCTTTGGAGtcac......................................................................................................................................................................................................................................................................... | 19 | tcac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGACAGCTTCCATTGCAGGATTCCAT............................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....................................................................................................................................................................................................TGTTGGGGAAGGGGAAGAGACTTTGa..................................................................................................................................................................................................................................................................................................... | 26 | a | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCTGTGGGCGGGATTTGGCAG.. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................................................................................................................................................TCTTCCTCCCTCAACAAAct.................................................................................................................................................................................................................................................................................................................................................... | 20 | ct | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ....................................................................................AGGACACAGACTGTGGCATTGAGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................AAGCTGGCCCTGAACTCAG.................................................................................................................................................................................................................................... | 19 | 14 | 0.07 | 0.07 | - | - | 0.07 | - | - | - | - | - | - | - | - | - | - | - | - |
| AGAGTAGAAGAGGTGCCATTCGGGTGCTGGTGGTGGAGCAGGACCACACGGTGAGGTCAGGGAGTAAGGGCAGTCATCTTATTGAGGACACAGACTGTGGCATTGAGGGCAGGGACTGTGCTTTGGACTTTGGAGCTTAAGAAATAGTTCCAGGCTCTTCCTCCCTCAACAAAGACCCGCAGCAATAACATTGTTTTGTTGGGGAAGGGGAAGAGACTTTGCTACTGTTGTTTAATCTCTTTGGAGATGGGGTTTCAATATATGGCTGAAGCTGGCCCTGAACTCAGCATTTTCCATTCTGTGCCTCCCAAGTGCTCCGATTACACGTGCTCCAGAACATTTACCCATACTTGCTCCTTGAAAAATGATTCCCCTTTGCATTTAAATGTATAACTGACAGCTTCCATTGCAGGATTCCATTATATATTACATCATGACAGTCTACGTCGGTTTTTCTTTTCACAGTATTCACGGGCTTCCTCCACAGGGCCTTCTGTGGGCGGGATTTGGCAGCA .......................................................................................................................................................((((((((((((((((((((((........(((((...)))))))))))))))..))))))))).))).....(((..((.........((((((.(((((...((....((((..((.(((((........))))).))..))))....))..)))))....))))))........))..))).................................................................................................................................................................................... ......................................................................................................................................................151..................................................................................................................................................................................................348..................................................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTCACAGTATTCACGGG........................................ | 21 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................TGTGCCTCCCAAGTGCTCCGATTACAt.............................................................................................................................................................................................. | 27 | t | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................TCCCAAGTGCTCCGATTACAC............................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..........................................................................................................CAGGGACTGTGCTTtaa........................................................................................................................................................................................................................................................................................................................................................................................................ | 17 | taa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTTTTTCTTTTCACAGTATTCA............................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |