(1)
OTHER.ip
(5)
OTHER.mut
(1)
OVARY
(5)
PIWI.ip
(3)
PIWI.mut
(1)
TDRD1.ip
(29)
TESTES

Sense strand
ACGTGGCCTATCATGGCCGCCTCCATGGCCCGGGGCGTGAGCGCCCGGGTCCTGTTACGGGCGGCCGGGGGATCTTGGGGACCCAGGGCCGGGCACGCGGCGGTAACATCTAGGACGTTCGGGACTACAGGTACATAGGGCTGGGCCGAGCCGCGGCGTGCAGCGAGGCCGCAGCCGCTCACCCACTCGTGTGTTTCCAGGCGAGCGGCGTGCTGGCGAGGAGGCGGCGGACAGCCCGGAGCTGCCCCGG
..................................................(((((..((..((.((...(((((((((....)))))((((......))))......)))).)).))..)).....))))).......................................................................................................................
..................................................51......................................................................................139.............................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
GSM475281(GSM475281)
total RNA. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
..............................................................................................................TAGGACGTTCGGGACTACAGGcgag................................................................................................................... 25 cgag 48.00 2.00 14.00 2.00 7.00 3.00 8.00 5.00 2.00 - - 2.00 - 1.00 2.00 2.00 - - - - - - - - - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGcga.................................................................................................................... 24 cga 14.00 2.00 - - - 2.00 - - 2.00 - 4.00 1.00 3.00 - - - - - - - - - - - 2.00 - - - - - - -
............................................................................................................TCTAGGACGTTCGGGACTACAGGcga.................................................................................................................... 26 cga 5.00 0.00 - 2.00 1.00 - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................................................TACATAGGGCTGGGCCGAGCCGCGGCGT........................................................................................... 28 1 5.00 5.00 1.00 - 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................TAACATCTAGGACGTTCGGGACTACAGGc...................................................................................................................... 29 c 3.00 1.00 - - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - 1.00 -
.......................................................TACGGGCGGCCGGGGGATCTTGGGGA......................................................................................................................................................................... 26 1 3.00 3.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................TCTAGGACGTTCGGGACTACAGGcgag................................................................................................................... 27 cgag 2.00 0.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................TAACATCTAGGACGTTCGGGACTACA......................................................................................................................... 26 1 2.00 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00
.......................................................................................................TAACATCTAGGACGTTCGGGACTAC.......................................................................................................................... 25 1 2.00 2.00 - - - - - - - - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGG....................................................................................................................... 21 1 2.00 2.00 - - - - - - - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGgtca................................................................................................................... 25 gtca 2.00 2.00 - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGTAC.................................................................................................................... 24 1 2.00 2.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - 1.00 - - - - -
....................................................................................................CGGTAACATCTAGGACGTTCGGGAC............................................................................................................................. 25 1 2.00 2.00 - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................TAACATCTAGGACGTTCGGGACTACAG........................................................................................................................ 27 1 2.00 2.00 - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGTGTTTCCAGGCGAGCGGCGTGCTGt.................................. 27 t 2.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - 1.00 - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGTACA................................................................................................................... 25 1 2.00 2.00 - - - - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................................................................ACATCTAGGACGTTCGGGACTACAGGc...................................................................................................................... 27 c 2.00 0.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................ACGTTCGGGACTACAGGTACATA................................................................................................................. 23 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................ATAGGGCTGGGCCGAGCCGCGGCata.......................................................................................... 26 ata 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................GGCGAGCGGCGTGCTGGCGAGGAGGtct....................... 28 tct 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................ATAGGGCTGGGCCGAGCCGCGGCG............................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
............................................................................................................TCTAGGACGTTCGGGACTACAGGcgat................................................................................................................... 27 cgat 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.................................................................................................................GACGTTCGGGACTACAGGTACATAGG............................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
............................................................................................................TCTAGGACGTTCGGGACTACAGGcgt.................................................................................................................... 26 cgt 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................GTAACATCTAGGACGTTCGGGACTAt.......................................................................................................................... 26 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................................................................................................TAACATCTAGGACGTTCGGGACTACAGG....................................................................................................................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TGGGGACCCAGGGCCGGGCACGCGGCG.................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................AGGACGTTCGGGACTACAGGcgag................................................................................................................... 24 cgag 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................TGTTACGGGCGGCCGGGGGATCTTt............................................................................................................................................................................. 25 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...............................................................................................................................................................................................TGTTTCCAGGCGAGCGGCGTGCTGG.................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................GCGTGCTGGCGAGGAGGCGG....................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................................TACAGGTACATAGGGCTGGGCCGAGC................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................CTCGTGTGTTTCCAGGCGAGCGGCGTG...................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.......................................................TACGGGCGGCCGGGGGATCTTGGGGAC........................................................................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................CACTCGTGTGTTTCCAGGCGAGCGGC......................................... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................ACATCTAGGACGTTCGGGACTACAGGT...................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGTGTTTCCAGGCGAGCGGCGTGC..................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGTGTTTCCAGGCGAGCGGCGTGCTG................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGcgcg................................................................................................................... 25 cgcg 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
......................................................................................................GTAACATCTAGGACGTTCGG................................................................................................................................ 20 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................CGCGGCGGTAACATCTAGGACGTTCGG................................................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................GACGTTCGGGACTACAGGTACATAGGGC............................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................GTACATAGGGCTGGGCCGAGCCGCGGCGT........................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................CTCGTGTGTTTCCAGGCGAGCGG.......................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..................................................................................................................................................................................................................TGCTGGCGAGGAGGCGGCGGACAGCCCGG........... 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................TTCGGGACTACAGGTACATAGGG.............................................................................................................. 23 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................TGTTACGGGCGGCCGGGGGATCTTGG............................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..................................................................................................................................GTACATAGGGCTGGGCCGAGCCGCGGC............................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................................................TACATAGGGCTGGGCCGAGCCGCGGC............................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGagag................................................................................................................... 25 agag 1.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................TACGGGCGGCCGGGGGATCTTGGGG.......................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................ACATAGGGCTGGGCCGAGCCGCGGCGT........................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................GCGGTAACATCTAGGACGTTCGGGAC............................................................................................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGTACAT.................................................................................................................. 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGgtc.................................................................................................................... 24 gtc 1.00 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGaaca................................................................................................................... 25 aaca 1.00 2.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................................TAGGACGTTCGGGACTACAGGTc..................................................................................................................... 23 c 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...........................................................................................................................................GCTGGGCCGAGCCGCGGC............................................................................................. 18 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................GGCCGGGCACGCGGCGGTAACATCTAGGACGTTCG................................................................................................................................. 35 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -

Antisense strand
ACGTGGCCTATCATGGCCGCCTCCATGGCCCGGGGCGTGAGCGCCCGGGTCCTGTTACGGGCGGCCGGGGGATCTTGGGGACCCAGGGCCGGGCACGCGGCGGTAACATCTAGGACGTTCGGGACTACAGGTACATAGGGCTGGGCCGAGCCGCGGCGTGCAGCGAGGCCGCAGCCGCTCACCCACTCGTGTGTTTCCAGGCGAGCGGCGTGCTGGCGAGGAGGCGGCGGACAGCCCGGAGCTGCCCCGG
..................................................(((((..((..((.((...(((((((((....)))))((((......))))......)))).)).))..)).....))))).......................................................................................................................
..................................................51......................................................................................139.............................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
GSM475281(GSM475281)
total RNA. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
........................................................................................................................................................................CCGCAGCCGCTCACCCACTCGTGTGTTT...................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -