(6)
OTHER.mut
(1)
OVARY
(3)
PIWI.ip
(3)
PIWI.mut
(1)
TDRD1.ip
(25)
TESTES

Sense strand
GGAGTTTACAGGCTGGGCCTGGGTGGAGACTTCACCGACTGCAGTTGCAGGTGGGTGAGCTGTGCGGTTTGAGGGAGGAGTGGGCTTGGACCGGCTTGGACCGGCTTGAATCTGGCTGTTGGAGGCAAGGCTCCTACTACTCTCGGTTGTGGTGCATCTCGTGAGCGCTCCGGAAAGGAAAGGTCCGCAGCGAGGAGCCTTCTGCACAGGGAGTTCTATATGGCAGCCGGCAGGGAGGTGACCCTTCCCT
................................................................(((.....(((((.((((((......((((......))))((((..(((.......)))..))))...)))))).)))))......(((((.((....))))))))))..............................................................................
.............................................................62...................................................................................................................179.....................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
..........................................................................GAGGAGTGGGCTTGGACCGGCTTGGACCG................................................................................................................................................... 29 1 6.00 6.00 6.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................TGGACCGGCTTGAATCTGGCTGTTGGAG.............................................................................................................................. 28 1 6.00 6.00 5.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TACTCTCGGTTGTGGTGCATCTCGTG....................................................................................... 26 1 5.00 5.00 - 3.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - -
............................................................................GGAGTGGGCTTGGACCGGCTTGGAC..................................................................................................................................................... 25 1 5.00 5.00 5.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................TGAGCTGTGCGGTTTGAGGGAGGA........................................................................................................................................................................... 24 1 5.00 5.00 4.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...........................................................................AGGAGTGGGCTTGGACCGG............................................................................................................................................................ 19 1 5.00 5.00 - - - - - - 2.00 - - - - 2.00 - - - - - 1.00 - - - - - - - -
..........................................................................................................TGAATCTGGCTGTTGGAGGCAAGGC....................................................................................................................... 25 1 4.00 4.00 - 1.00 3.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................TTGAATCTGGCTGTTGGA............................................................................................................................... 18 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................TGGCTGTTGGAGGCAAGGC....................................................................................................................... 19 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TACTCTCGGTTGTGGTGCATCTCGT........................................................................................ 25 1 3.00 3.00 - - - 2.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
..........................................................................GAGGAGTGGGCTTGGACC.............................................................................................................................................................. 18 1 3.00 3.00 - - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TGAATCTGGCTGTTGGAGGCAAGGCT...................................................................................................................... 26 1 3.00 3.00 - - - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................AGGCTCCTACTACTCTCGGTTGTGGT................................................................................................. 26 1 2.00 2.00 - - - - - - - - - - - - - - - 2.00 - - - - - - - - - -
...............................................................................................................CTGGCTGTTGGAGGCAAG......................................................................................................................... 18 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................TTGAATCTGGCTGTTGGAGGCAAGG........................................................................................................................ 25 1 2.00 2.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TCGTGAGCGCTCCGGAA........................................................................... 17 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - -
...............................................................................................................................................................................AGGAAAGGTCCGCAGCGAG........................................................ 19 1 2.00 2.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - 1.00 -
.........................................................................................................................................................................CCGGAAAGGAAAGGTCCGCAGCGAG........................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................................................................TTGAGGGAGGAGTGGGCTTGGACCGG............................................................................................................................................................ 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................AGGAGTGGGCTTGGACCG............................................................................................................................................................. 18 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................................................TCCTACTACTCTCGGTTGTGG.................................................................................................. 21 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TCTCGGTTGTGGTGCATCTCGTGAGCGC.................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
................................................................................................................TGGCTGTTGGAGGCAAGGCTCCTAC................................................................................................................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................GTGGTGCATCTCGTGAGCGCTCCG.............................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.............................................................................................................................................CTCGGTTGTGGTGCATCTCGTGA...................................................................................... 23 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................TGGACCGGCTTGAATCTGGCTGTTGGA............................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................GTGGGCTTGGACCGGCTTt........................................................................................................................................................ 19 t 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................................................................................................................AGGCAAGGCTCCTACTACTCTCGGTT...................................................................................................... 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................GCTCCGGAAAGGAAAGGTCCGC.............................................................. 22 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................TGCAGTTGCAGGTGGGTGAGCTGa........................................................................................................................................................................................... 24 a 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................GTGGAGACTTCACCGACTGCAGTTGC.......................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
......................................................................................................................................TACTACTCTCGGTTGTGGTGCATCTC.......................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................GGAGTTCTATATGGCAGCCGGCAGGGA.............. 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................GCGGTTTGAGGGAGGAGTGGGC..................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.....................................................................................................CGGCTTGAATCTGGCTGTTGGAGG............................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................GTTCTATATGGCAGCCGG.................... 18 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.................................ACCGACTGCAGTTGCAGG....................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..................................................................GTTTGAGGGAGGAGTGGa...................................................................................................................................................................... 18 a 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................TGGTGCATCTCGTGAGCGCTCCGGAAA.......................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
......TACAGGCTGGGCCTGGGTGGAGA............................................................................................................................................................................................................................. 23 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..................................................GTGGGTGAGCTGTGCGGTTTGAGGG............................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................................................................................................................TCTGCACAGGGAGTTCTATATGGCAGCaa..................... 29 aa 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
................................................................CGGTTTGAGGGAGGAGTGGGC..................................................................................................................................................................... 21 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.....TTACAGGCTGGGCCTGGGTGGAGACT........................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................GGGTGGAGACTTCACCGAC................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...............................................................................GTGGGCTTGGACCGGCTTGGACCGGCTTt.............................................................................................................................................. 29 t 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................GGAGTGGGCTTGGACCGGCTTGGACCGGCT................................................................................................................................................ 30 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
...............................................................................................................................AGGCTCCTACTACTCTCGG........................................................................................................ 19 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................ATCTGGCTGTTGGAGGCAAG......................................................................................................................... 20 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................TTTGAGGGAGGAGTtata..................................................................................................................................................................... 18 tata 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.........................................................................................................TTGAATCTGGCTGTTGGAGGCAAG......................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................TTGAATCTGGCTGTTGGAGGCAAGGCT...................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................TTGCAGGTGGGTGAGCTG............................................................................................................................................................................................ 18 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TGAATCTGGCTGTTGGAGGCAAGGCTC..................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.........AGGCTGGGCCTGGGTGGAGACTTC......................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00

Antisense strand
GGAGTTTACAGGCTGGGCCTGGGTGGAGACTTCACCGACTGCAGTTGCAGGTGGGTGAGCTGTGCGGTTTGAGGGAGGAGTGGGCTTGGACCGGCTTGGACCGGCTTGAATCTGGCTGTTGGAGGCAAGGCTCCTACTACTCTCGGTTGTGGTGCATCTCGTGAGCGCTCCGGAAAGGAAAGGTCCGCAGCGAGGAGCCTTCTGCACAGGGAGTTCTATATGGCAGCCGGCAGGGAGGTGACCCTTCCCT
................................................................(((.....(((((.((((((......((((......))))((((..(((.......)))..))))...)))))).)))))......(((((.((....))))))))))..............................................................................
.............................................................62...................................................................................................................179.....................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
...............................................................................................................................................................................................GAGGAGCCTTCTGCACAGGGAGTTCTA................................ 27 1 16.00 16.00 8.00 2.00 3.00 - - - - 1.00 2.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................GAGCCTTCTGCACAGGGAGTTCTATA.............................. 26 1 11.00 11.00 8.00 1.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................................................................................................................................GCGAGGAGCCTTCTGCACAGGGAGTTCTA................................ 29 1 10.00 10.00 8.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................AGCGAGGAGCCTTCTGCACAGGGAGTTC.................................. 28 1 9.00 9.00 9.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................GGAGCCTTCTGCACAGGGAGTTCTATA.............................. 27 1 3.00 3.00 - - - - - 1.00 - 1.00 - - - - - - - - - - - - 1.00 - - - - -
................................................................................................................................................................................................AGGAGCCTTCTGCACAGGGAGTTCTA................................ 26 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................GAGCCTTCTGCACAGGGAGTTCTA................................ 24 1 3.00 3.00 - 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................GAGGAGCCTTCTGCACAGGGAGTTCTAa................................ 28 a 3.00 0.00 - - - 3.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................GCCTTCTGCACAGGGAGTTCTATATGG........................... 27 1 2.00 2.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................GCTCCGGAAAGGAAAGGTCCGCAGCGA......................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................AGGGAGTTCTATATGGCAGCCGGCA.................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................GGAGCCTTCTGCACAGGGAGTTCTA................................ 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................GCCTTCTGCACAGGGAGTTCTATA.............................. 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................GCCTTCTGCACAGGGAGTTCTATATGGCA......................... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................CAAGGCTCCTACTACTCTCGGTTGTG................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................TCTGCACAGGGAGTTCTATATGGCA......................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................GCCTGGGTGGAGACTTCACCGACTGCA............................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................CCTTCTGCACAGGGAGTTCTATA.............................. 23 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -