| Gene: 1300018I17Rik | ID: uc009nut.1_intron_1_0_chr8_125767696_r.5p | SPECIES: mm9 |
|
|
(1) OTHER.ip |
(1) OTHER.mut |
(5) PIWI.ip |
(1) PIWI.mut |
(1) TDRD1.ip |
(19) TESTES |
| GCCCAAGAGGCCAGGCCTGAGGGTGAATCCCAGCCCCCTGCCGCTGCCATGTGAGTTCAGAGTGGAGGCAGTGTCTGGAGGTGTATGTGTCCCTGCCCGGCGACTGGCCAGGGAGGACCCTGGTAGCCCCAGATGGATCATATCACCTCAGAGCACAGCTCATAGCTACCAAAGACCTTGGATGGAGTCAGGGCAAGAAGAAGGGTTCCCACCCCACAACCGTGTGTTCCAGTCCATCTGAACAAGCTGC |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesWT2() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................TTGGATGGAGTCAGGGCAAGAAGA................................................. | 24 | 1 | 5.00 | 5.00 | - | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TGTGAGTTCAGAGTGGAGGCAGTGTCT.............................................................................................................................................................................. | 27 | 1 | 4.00 | 4.00 | 1.00 | - | - | - | - | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGTGTTCCAGTCCATCTGAACAAGCTGC | 28 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................TGTGAGTTCAGAGTGGAGGCAGTGTC............................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................TGCCATGTGAGTTCAGAGTGGAGGCAG................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TTGGATGGAGTCAGGGCAAGAAGAAG............................................... | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TGGATGGAGTCAGGGCAAGAAGAAGGGT............................................ | 28 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................................................................................................................................................TGGATGGAGTCAGGGCAAGAAGA................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................TGGAGTCAGGGCAAGAAGAAGGGTTC.......................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................TGCCATGTGAGTTCAGAGTGGAGGC..................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TGGATCATATCACCTCAGAGCACAGCT.......................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TATCACCTCAGAGCAC.............................................................................................. | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................TGCCGCTGCCATGTGAGTTCAGAGTGGt........................................................................................................................................................................................ | 28 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TGTGAGTTCAGAGTGGAGGCAGTGT................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................CATGTGAGTTCAGAGTGGAGGCAGTGT................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TGTGAGTTCAGAGTGGAGGCAGTGTCa.............................................................................................................................................................................. | 27 | a | 1.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................TGTGAGTTCAGAGTGGAGGCAGTGTCTt............................................................................................................................................................................. | 28 | t | 1.00 | 4.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TTGGATGGAGTCAGGGCAAGAAGAAGG.............................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTCAGAGTGGAGGCAGTGT................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTCAGAGTGGAGGCAGTGTCT.............................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TGGATCATATCACCTCAGAGCACAGC........................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTTCAGAGTGGAGGCAGTGTC............................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................CCAAAGACCTTGGATGGAGTCAGGGC........................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..................................................................................................................................................................................................................................TTCCAGTCCATCTGAACAAGCTGC | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................GTGTCTGGAGGTGTATGTGT................................................................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................CCTTGGATGGAGTCAGGGCAAGAAGAAGG.............................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................TGCCATGTGAGTTCAGAGTGGAGGCAGT.................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................CAGTGTCTGGAGGTGTATGTGTCaca............................................................................................................................................................ | 26 | aca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............................................TGCCATGTGAGTTCAGAGTGGAGGCA.................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| GCCCAAGAGGCCAGGCCTGAGGGTGAATCCCAGCCCCCTGCCGCTGCCATGTGAGTTCAGAGTGGAGGCAGTGTCTGGAGGTGTATGTGTCCCTGCCCGGCGACTGGCCAGGGAGGACCCTGGTAGCCCCAGATGGATCATATCACCTCAGAGCACAGCTCATAGCTACCAAAGACCTTGGATGGAGTCAGGGCAAGAAGAAGGGTTCCCACCCCACAACCGTGTGTTCCAGTCCATCTGAACAAGCTGC |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesWT2() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................CCCTGCCGCTGCCATGTGAGTTCAGA............................................................................................................................................................................................. | 26 | 1 | 8.00 | 8.00 | 1.00 | - | 3.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| .......................................GCCGCTGCCATGTGAGTTCAGAGTGGA........................................................................................................................................................................................ | 27 | 1 | 5.00 | 5.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...................................CCTGCCGCTGCCATGTGAGTTCAGAa............................................................................................................................................................................................. | 26 | a | 5.00 | 0.00 | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................CCTGCCGCTGCCATGTGAGTTCAGA............................................................................................................................................................................................. | 25 | 1 | 3.00 | 3.00 | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................ACCGTGTGTTCCAGTCCATCTGAACAA..... | 27 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................CCCCCTGCCGCTGCCATGTGAGTTCA............................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................TGCCGCTGCCATGTGAGTTCAGAGTGGA........................................................................................................................................................................................ | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................GCTGCCATGTGAGTTCAGAGTGGAGGCA.................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................CCCCTGCCGCTGCCATGTGAGTTCA............................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................ACAACCGTGTGTTCCAGTCCATCTGA......... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................GCTACCAAAGACCTTGGATGGAGTCA............................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................CCCACAACCGTGTGTTCCAGTCCATC............ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..................................CCCCTGCCGCTGCCATGTGAGTTCAGA............................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................CGCTGCCATGTGAGTTCAGAGTGGAGG...................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................TGCCATGTGAGTTCAGAGTGGAGGCA.................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................CCGCTGCCATGTGAGTTCAGAGTGGA........................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...............................................................................................................................................CACCTCAGAGCACAGCTCATAGCTACCA............................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .................................................................................................................................................................................................................CACCCCACAACCGTGTGTTCCAGTCCA.............. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................CCACCCCACAACCGTGTGTTCCAGTCCA.............. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................AGCTACCAAAGACCT........................................................................ | 15 | 11 | 0.45 | 0.45 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.45 |