(4)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(26)
TESTES

Sense strand
GTACCTCAGTCTGCTAAGCACTCAGGTTTGCCGGACTTTGAGACTGGGGAGTGAAATTGGACAGTTGTGCGTGCCAGTTGTTGCAGTGAAGAGACTTGAGGAGAAGCCCATTTCATAACTGTTGCCACCCACTCCCATTTAGACAAGGCTGATAATATTTAAGCTGTTCGGCTGAGAAGTTGCTGTTCAGTGGGAGGGGAGCAGAGCGGTTTTTGTGGTGTTGCCTGTCCCTGAGCATCTTTAAGAGGAG
......................................................((((((((........)).))))))((.(((((...((((..((.((.....))))))))...))))).))..(((.(((((..((((......))))..........((((..((((.........))))..))))))))))))...................................................
..................................................51...................................................................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT4()
Testes Data. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
.......................................................ATTGGACAGTTGTGCGTGCCAGTTGTTGCAGTGAAGAGACTTGAGGAGAAGC............................................................................................................................................... 52 1 12.00 12.00 - - - - 12.00 - - - - - - - - - - - - - - - - - - - - -
......................................TGAGACTGGGGAGTGAAATTGGACAG.......................................................................................................................................................................................... 26 1 11.00 11.00 - 6.00 - 4.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................TGTTGCCTGTCCCTGAGC.............. 18 1 9.00 9.00 - - - - - 9.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................TGAGAAGTTGCTGTTCAGTGGGAGG..................................................... 25 1 6.00 6.00 2.00 1.00 1.00 - - - - - - 2.00 - - - - - - - - - - - - - - - -
..............................................................................TGTTGCAGTGAAGAGACTTGAGGAGA.................................................................................................................................................. 26 1 3.00 3.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..............TAAGCACTCAGGTTTGCCGGACTTTG.................................................................................................................................................................................................................. 26 1 3.00 3.00 - - 2.00 - - - - - - - - - - - 1.00 - - - - - - - - - - -
......................................TGAGACTGGGGAGTGAAATTGGACAGT......................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - - 1.00 - - -
............................................TGGGGAGTGAAATTGGACAGTTGTGC.................................................................................................................................................................................... 26 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................TGTTGCAGTGAAGAGACTTGAGGAG................................................................................................................................................... 25 1 2.00 2.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
............................................................................................................................................................................TGAGAAGTTGCTGTTCAGTGGGAGGG.................................................... 26 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TGATAATATTTAAGCTGTTCGGCTGAGA......................................................................... 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................AGTGAAATTGGACAGTTGTGCGTGCC............................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................GTGAAGAGACTTGAGGAGAAGCCCATT.......................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................TGAGCATCTTTAAGAGGAG 19 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAAATTGGACAGTTGTGCGTGCCA.............................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..............TAAGCACTCAGGTTTGCCGGACTTT................................................................................................................................................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........TGCTAAGCACTCAGGTTTGCCGGAC...................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................TTGAGACTGGGGAGTGAAATTGGAC............................................................................................................................................................................................ 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................TTGCTGTTCAGTGGGAGGGGAGCAGA............................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................TGAAGAGACTTGAGGAGAAGCCCATT.......................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................TGTTGCAGTGAAGAGACTTGAGGAGAA................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
............................................................................................................................................................................TGAGAAGTTGCTGTTCAGTGGGAG...................................................... 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................CGGACTTTGAGACTGGGGAGTGAAA.................................................................................................................................................................................................. 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................TTGCAGTGAAGAGACTTGAGGAGAAGC............................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................TTGCTGTTCAGTGGGAGGGGAGCAG.............................................. 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TGATAATATTTAAGCTGTTCGGCTGAGt......................................................................... 28 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................TGAAATTGGACAGTTGTGCGTGCCA.............................................................................................................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TTAAGCTGTTCGGCTGAGA......................................................................... 19 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
........................................................................................................................................................TAATATTTAAGCTGTTCGGCTGAGAA........................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.................................................................................................................................................AGGCTGATAATATTTAAGCTGTTCGGCT............................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TTGCCACCCACTCCCATTTAGACAAGtc..................................................................................................... 28 tc 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................................................................................TGCAGTGAAGAGACTTGAGGAGAAGCC.............................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..................................................................................................................................................................................................................TTTTGTGGTGTTGCCTGT...................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...................................................................TGCGTGCCAGTTGTTGCAGTGAAGA.............................................................................................................................................................. 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................TGCCGGACTTTGAGACTGGGGAGTG..................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................TTTCATAACTGTTGCCACCCACTCCCAT................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
................................................GAGTGAAATTGGACAGTTGTG..................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...................................................................TGCGTGCCAGTTGTTGCAGTGAAGAG............................................................................................................................................................. 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TGATAATATTTAAGCTGTTCGGC.............................................................................. 23 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................AGTGAAGAGACTTGAGGAGAAGCCC............................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
................................GGACTTTGAGACTGGGGAGTGAAAT................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.......................AGGTTTGCCGGACTTTGAGACTGGG.......................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................TTTGAGACTGGGGAGTGAAATTGGACA........................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................TGAAGAGACTTGAGGAGAAGCCCATTT......................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............CTAAGCACTCAGGTTTGCCGGACTTTGA................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TGATAATATTTAAGCTGTTCGGCTGAGAA........................................................................ 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........TGCTAAGCACTCAGGTTTGCCGGACT..................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.....TCAGTCTGCTAAGCACTCAGGTTTGCCGG........................................................................................................................................................................................................................ 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................GAGACTGGGGAGTGAAATTGGACAG.......................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................GAAGTTGCTGTTCAGTGGGAGGGGA.................................................. 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................GACTTTGAGACTGGG.......................................................................................................................................................................................................... 15 8 0.25 0.25 - - - - - - - - - - 0.25 - - - - - - - - - - - - - - -

Antisense strand
GTACCTCAGTCTGCTAAGCACTCAGGTTTGCCGGACTTTGAGACTGGGGAGTGAAATTGGACAGTTGTGCGTGCCAGTTGTTGCAGTGAAGAGACTTGAGGAGAAGCCCATTTCATAACTGTTGCCACCCACTCCCATTTAGACAAGGCTGATAATATTTAAGCTGTTCGGCTGAGAAGTTGCTGTTCAGTGGGAGGGGAGCAGAGCGGTTTTTGTGGTGTTGCCTGTCCCTGAGCATCTTTAAGAGGAG
......................................................((((((((........)).))))))((.(((((...((((..((.((.....))))))))...))))).))..(((.(((((..((((......))))..........((((..((((.........))))..))))))))))))...................................................
..................................................51...................................................................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT4()
Testes Data. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
........................................................................................................................................................................................................................GGTGTTGCCTGTCCCTGAGCATCTTTA....... 27 1 4.00 4.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................CCTGTCCCTGAGCATCTTTAAGAGGA. 26 1 2.00 2.00 - - - - - - - - - - - 1.00 1.00 - - - - - - - - - - - - -
..................................................................GTGCGTGCCAGTTGTTGCAGTGAAGAG............................................................................................................................................................. 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................GCCCATTTCATAACTgac.................................................................................................................................. 18 gac 2.00 0.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - -
.....................TCAGGTTTGCCGGACTTTGAGACTGG........................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................GGTGTTGCCTGTCCCTGAGCATCTT......... 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..............................................................................................................................................................................................................................GCCTGTCCCTGAGCATCTTTAAGAGGA. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................TTCGGCTGAGAAGTTGCTGTTCAGTGGGA....................................................... 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.................................................................TGTGCGTGCCAGTTGTTGCAGTGAAGA.............................................................................................................................................................. 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GTGGTGTTGCCTGTCCCTGAGCATCTTTA....... 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GCCAGTTGTTGCAGTGAAGAGACTTGA....................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................TCCCATTTAGACAAGGCTGATAATATT........................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTGGTGTTGCCTGTCCCT.................. 19 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................GAAGAGACTTGAGGAGAAGCCCATTTCA....................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...........................................................................................................................................................................................................................GTTGCCTGTCCCTGAGCATCTTTAAGA.... 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............AAGCACTCAGGTTTGCCGGACTTTGAG................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
........................................................................................................................................................................................................................GTGTTGCCTGTCCCTGAGCATCTTTAa....... 27 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................TGCCGGACTTTGAGACTGGGGAGTGAA................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.................................................................................................................................................AGGCTGATAATATTTAAGCTGTTCGGCTGA........................................................................... 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................CATTTAGACAAGGCTGATAATATTTAA........................................................................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -