(3)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(23)
TESTES

Sense strand
TGACCTTCACAAGATGGAAGAGTGGAAAACCTTGGTGGAGATGGATCCGAGTAAGCCGGGTGGGCGGGGGCCCATTATGGAGCGAGAGTCTTTTTCAAAGCGGTCCCTGCTCTTACCCCTGGGCAGATTTCCCCAGGAAGAGCCTGGGGATGGGGCAGCCTTATGTGGTACACTCCTGAGTGCTCCTGAGTGCTCTGGGTGTTCTGGGTGCTAGCAGGGACAAAGTGAGGAGCAGCGTAAGTCACTGGTA
.....................................................................((((.....(((.((.(((.....)))....)).)))((((((........))))))...((((((((.....))))))))..)))).(((......)))....(((.(((..((....))..))).)))...................................................
.....................................................................70................................................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
................................TGGTGGAGATGGATCCGAGTAAGCCGG............................................................................................................................................................................................... 27 1 17.00 17.00 2.00 10.00 - 4.00 - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGGTGCTAGCAGGGACAAAGTGAGG.................... 26 1 11.00 11.00 6.00 2.00 - - - 1.00 - 1.00 - - - - - - - 1.00 - - - - - - -
............................................................................................................................................................................................................TGGGTGCTAGCAGGGACAAAGTGAG..................... 25 1 7.00 7.00 3.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................TTATGGAGCGAGAGTCTTTTTCAAAGC..................................................................................................................................................... 27 1 6.00 6.00 - - 6.00 - - - - - - - - - - - - - - - - - - - -
......................TGGAAAACCTTGGTGGAGATGGATCC.......................................................................................................................................................................................................... 26 2 5.00 5.00 3.00 1.00 - - 0.50 - - 0.50 - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGGGTGTTCTGGGTGCTAGCAGGGA.............................. 25 1 4.00 4.00 2.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................TGGAGCGAGAGTCTTTTTCAAAGCGGTC................................................................................................................................................. 28 1 4.00 4.00 - 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - -
..............TGGAAGAGTGGAAAACCTTGGTGGA................................................................................................................................................................................................................... 25 2 3.00 3.00 - 0.50 - - - - - 0.50 - - - 2.00 - - - - - - - - - - -
..............TGGAAGAGTGGAAAACCTTGGTGGAG.................................................................................................................................................................................................................. 26 2 3.00 3.00 - 1.50 - - 1.50 - - - - - - - - - - - - - - - - - -
...........................................................................TATGGAGCGAGAGTCTTTTTCAAAGCGG................................................................................................................................................... 28 1 3.00 3.00 - 1.00 - - - - 2.00 - - - - - - - - - - - - - - - -
.........................................TGGATCCGAGTAAGCCGGGTGGGCGG....................................................................................................................................................................................... 26 1 2.00 2.00 - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................TAGCAGGGACAAAGTGAGGAGCAGCGT............ 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGGTGCTAGCAGGGACAAAGTGA...................... 24 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - -
..........................................................................................................................................................................................TGAGTGCTCTGGGTGTTCTGGGTGCT...................................... 26 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - -
................................TGGTGGAGATGGATCCGAGTAAGCCGGt.............................................................................................................................................................................................. 28 t 2.00 17.00 2.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TCAAAGCGGTCCCTGCTC.......................................................................................................................................... 18 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TCTGGGTGCTAGCAGGGACAAAGTGA...................... 26 1 2.00 2.00 - - - - - - 1.00 - - - - - - - 1.00 - - - - - - - -
.............................................................................TGGAGCGAGAGTCTTTTTCAAAGCGGT.................................................................................................................................................. 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
..............TGGAAGAGTGGAAAACCTTGGTGGAGA................................................................................................................................................................................................................. 27 2 1.50 1.50 1.00 0.50 - - - - - - - - - - - - - - - - - - - - -
.........CAAGATGGAAGAGTGGAAAACCTTGG....................................................................................................................................................................................................................... 26 2 1.50 1.50 1.00 - - 0.50 - - - - - - - - - - - - - - - - - - -
......TCACAAGATGGAAGAGTGGAAAACCTTG........................................................................................................................................................................................................................ 28 2 1.50 1.50 1.50 - - - - - - - - - - - - - - - - - - - - - -
......................TGGAAAACCTTGGTGGAGATGGATC........................................................................................................................................................................................................... 25 2 1.50 1.50 - 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - -
...........................................................................TATGGAGCGAGAGTCTTTTTCAAAGCGGT.................................................................................................................................................. 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGCTAGCAGGGACAAAGTGAGGAGCA................ 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGCTAGCAGGGACAAAGTGAGGAGCAt............... 27 t 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TGAGTGCTCTGGGTGTTCTGGGTGCa...................................... 26 a 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........CAAGATGGAAGAGTGGAAAACCTTGGT...................................................................................................................................................................................................................... 27 2 1.00 1.00 0.50 - - - - - - - - - - - - 0.50 - - - - - - - - -
..........................................................................................................................................................................................................TCTGGGTGCTAGCAGGGACAAAGTGAG..................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................TATGGAGCGAGAGTCTTTTTCAAAGC..................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................TGAGTGCTCCTGAGTGCTCTGGGT.................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - -
...................................................................................................................................................................................................TGGGTGTTCTGGGTGCTAGCAGGGAaa............................ 27 aa 1.00 4.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TTATGTGGTACACTCCTGAGTGCTCCT............................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................AGCAGGGACAAAGTGAGGAGCAGCGT............ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
........ACAAGATGGAAGAGTGGAAAACCTTGG....................................................................................................................................................................................................................... 27 2 1.00 1.00 - 0.50 - - - - - - - - - - - - - - - - - - - - 0.50
...................................................................................................................................CCCAGGAAGAGCCTGGGGATGGGGaac............................................................................................ 27 aac 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - -
...................................................................................................................................................................................................................................AGGAGCAGCGTAAGTCACTGGTAcag 26 cag 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................TGCTCTGGGTGTTCTGGGTGCTAGCAGG................................ 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
.........................................TGGATCCGAGTAAGCCGGGTGGGCGGGGGC................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGGGTGTTCTGGGTGCTAGCAGGGgc............................. 26 gc 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
.................................GGTGGAGATGGATCCGA........................................................................................................................................................................................................ 17 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................AGGAGCAGCGTAAGTCACTGGTA 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................TTATGGAGCGAGAGTCTTTTTCAAAGCGGT.................................................................................................................................................. 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................TAGCAGGGACAAAGTGAGGAGCAGCGTA........... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................TGGAAAACCTTGGTGGAGATGGATCCG......................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - -
...................................................................................................................................................................................................TGGGTGTTCTGGGTGCTAGCAGGGAC............................. 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
...................................................................................................................................................................................................................TAGCAGGGACAAAGTGAGGAGCAGCG............. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................TATGGAGCGAGAGTCTTTTTCAAAGCG.................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - -
................................................................................................................................................................................TGAGTGCTCCTGAGTGCTCTGGGTGT................................................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................GTGCTCTGGGTGTTCTGGGTGCTAGCA.................................. 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
.....TTCACAAGATGGAAGAGTGGAAAACCTT......................................................................................................................................................................................................................... 28 2 1.00 1.00 0.50 0.50 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGGTGCTAGCAGGGACAAAGTGAGGg................... 27 g 1.00 11.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................TCCGAGTAAGCCGGGTGGGCGGGGGC................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................TATGTGGTACACTCCTGAGTGCTCCTG.............................................................. 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................................................................................................................................GTGCTCTGGGTGTTCTGGGTGCT...................................... 23 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
.................................................................................................................................................................................................................GCTAGCAGGGACAAAGTGAGGAGCA................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - -
..............TGGAAGAGTGGAAAACCTTGGTGGAGAT................................................................................................................................................................................................................ 28 2 1.00 1.00 - - - 0.50 - - - 0.50 - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................TAGCAGGGACAAAGTGAGGAGCAGaa............. 26 aa 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................GGTGCTAGCAGGGACAAAGTGAGGA................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................TGGAGCGAGAGTCTTTTTCAAAGCGG................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................TTTTCAAAGCGGTCatcc............................................................................................................................................. 18 atcc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - -
......................TGGAAAACCTTGGTGGAGATGGATCa.......................................................................................................................................................................................................... 26 a 0.50 1.50 0.50 - - - - - - - - - - - - - - - - - - - - - -
............GATGGAAGAGTGGAAAACCTTGGTG..................................................................................................................................................................................................................... 25 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - -
........ACAAGATGGAAGAGTGGAAAACCTTG........................................................................................................................................................................................................................ 26 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - -
........ACAAGATGGAAGAGTGGAAAACCTTGGT...................................................................................................................................................................................................................... 28 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - -
.........................AAAACCTTGGTGGAGATGGAT............................................................................................................................................................................................................ 21 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - 0.50 -
..........AAGATGGAAGAGTGGAAAACCTTGGT...................................................................................................................................................................................................................... 26 2 0.50 0.50 - - - - - - - - - - - - - 0.50 - - - - - - - - -
..............TGGAAGAGTGGAAAACCTTGGTGGAGt................................................................................................................................................................................................................. 27 t 0.50 3.00 - 0.50 - - - - - - - - - - - - - - - - - - - - -
.....................GTGGAAAACCTTGGTGGAGATGGATCC.......................................................................................................................................................................................................... 27 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
TGACCTTCACAAGATGGAAGAGTGGAAAACCTTGGTGGAGATGGATCCGAGTAAGCCGGGTGGGCGGGGGCCCATTATGGAGCGAGAGTCTTTTTCAAAGCGGTCCCTGCTCTTACCCCTGGGCAGATTTCCCCAGGAAGAGCCTGGGGATGGGGCAGCCTTATGTGGTACACTCCTGAGTGCTCCTGAGTGCTCTGGGTGTTCTGGGTGCTAGCAGGGACAAAGTGAGGAGCAGCGTAAGTCACTGGTA
.....................................................................((((.....(((.((.(((.....)))....)).)))((((((........))))))...((((((((.....))))))))..)))).(((......)))....(((.(((..((....))..))).)))...................................................
.....................................................................70................................................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
.................................................................................................................................................................................GAGTGCTCCTGAGTGCTCTGGGTGTTCT............................................. 28 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - -