(7)
OTHER.mut
(6)
PIWI.ip
(3)
PIWI.mut
(31)
TESTES

Sense strand
CCTGAGGTCGCGGATTCCGAAGCCCCGGAGGCAGATTCCGAGTGCAGTGGGTAGGAGGCTGTCCTCCGGGCCTCGCCGACCATCCTGCGGACGGACTGGGCGTGGCCGGAGGAACTGTCCCGAAGCTGTGGGGCCTTTCATTTGGCCTTGGGAAGAGCAGCAGGAGAAGGCGGGGCTCCTCCCCACGTTTCGGCCGAAGTGGCTGCAGAGCTGAAGGGGTGGGGCCTCGGGGTAGCCCGGTGAGTGGATCCTGTCCTCTCTCCTCAGCCCTGGACCATAGCCAGCACACACTGAGGCAGGAATGGCCCCGAGACCTC
.....................................................................................................................................((((((.(((((((..((((.((((.((........))...)))).))))........)))))))..((((....))))))))))...................................................................................................
...................................................................................................................................132.......................................................................................222.............................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT3()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
........................................................................................GGACGGACTGGGCGTG..................................................................................................................................................................................................................... 16 1 10.00 10.00 - - 10.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................TGCGGACGGACTGGGCGT...................................................................................................................................................................................................................... 18 1 7.00 7.00 - 7.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TTCATTTGGCCTTGGGAAGAGCAGC............................................................................................................................................................ 25 1 6.00 6.00 4.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - 1.00 -
........................................................................................................................................TTCATTTGGCCTTGGGAAGAGCAGCA........................................................................................................................................................... 26 1 5.00 5.00 - - - - 1.00 - - 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TTTGGCCTTGGGAAGAGCAGCAGG......................................................................................................................................................... 24 1 5.00 5.00 4.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................TCCTGCGGACGGACTGGGCGTGGCC.................................................................................................................................................................................................................. 25 1 3.00 3.00 - - - - - - - - - - - - 1.00 - - - - 1.00 - - - 1.00 - - - - - - - - -
.........................................GTGCAGTGGGTAGGAGGCTGTCCT............................................................................................................................................................................................................................................................ 24 1 2.00 2.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................CCTGCGGACGGACTGGGCGTGGCCGGA............................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................TCCTGCGGACGGACTGGGCGTGG.................................................................................................................................................................................................................... 23 1 2.00 2.00 - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
....................................TCCGAGTGCAGTGGGTAGGAGGCTG................................................................................................................................................................................................................................................................ 25 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TTGGCCTTGGGAAGAGCAGCAGGAGA...................................................................................................................................................... 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................CGAAGTGGCTGCAGAGCTGAAGGGGTG................................................................................................ 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................TCCTGCGGACGGACTGGGCGTGGC................................................................................................................................................................................................................... 24 1 2.00 2.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - 1.00 - - -
........................................................................................GGACGGACTGGGaacg..................................................................................................................................................................................................................... 16 aacg 2.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
....................................TCCGAGTGCAGTGGGTAGGAGGCTGT............................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
...........................................GCAGTGGGTAGGAGGCTG................................................................................................................................................................................................................................................................ 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
........................................................................................................................CGAAGCTGTGGGGCCTTTCATTTGGC........................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...........................................................................................................................................................................GGGGCTCCTCCCCACGTTTCGGCCGAAG...................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................GACCATCCTGCGGACGGACTGGGCGTG..................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................ACGGACTGGGCGTGGCCGGAGGAAC.......................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..TGAGGTCGCGGATTCCGAAGCCCCGG................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................GGACGGACTGGGCGTGGCCGG................................................................................................................................................................................................................ 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................................................................................................................................................AGTGGCTGCAGAGCTGAAGGGGTGG............................................................................................... 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................TTCCGAGTGCAGTGGGTAGGAGGCTGTC.............................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.....................................................................................TGCGGACGGACTGGGCGTGGCCGGAGt............................................................................................................................................................................................................. 27 t 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................CGAAGTGGCTGCAGAGCTGAAGGGG.................................................................................................. 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................TGCGGACGGACTGGGCGTGGCCGGA............................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................TGCGGACGGACTGGGCGTGGCCGGtt.............................................................................................................................................................................................................. 26 tt 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................................................................TGCGGACGGACTGGGCGTGGCCGGAa.............................................................................................................................................................................................................. 26 a 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..TGAGGTCGCGGATTCCGAAGCCCCGGA................................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
..................................................................................................................................................................................................CGAAGTGGCTGCAGAGCTGAAGGG................................................................................................... 24 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................CGAAGTGGCTGCAGAGCTGAAGGGGT................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.........................................................................................................................................TCATTTGGCCTTGGGAAGAGCAGCAG.......................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................TTCGGCCGAAGTGGCTGCAGAGCTGt....................................................................................................... 26 t 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..TGAGGTCGCGGATTCCGAAGCCCCGGAt............................................................................................................................................................................................................................................................................................... 28 t 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................TTCCGAGTGCAGTGGGTAGGAGGCTG................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................TGTCCTCTCTCCTCAGCCCTGGAat......................................... 25 at 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
............................................................................................................................................................................................TTCGGCCGAAGTGGCTGCAGAGCTGA....................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................................................CGGACGGACTGGGCGTGGCCGGAGG............................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................AGAGCTGAAGGGGTGGGGCCTCGGG...................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..................................................................................TCCTGCGGACGGACTGGGCGTGGtcgg................................................................................................................................................................................................................ 27 tcgg 1.00 2.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..TGAGGTCGCGGATTCCGAAGCCCCG.................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................TCCTGCGGACGGACTGGGCGTG..................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................ATCCTGTCCTCTCTCCTCA................................................... 19 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................GCCTTGGGAAGAGCAGCAGGAGAAGGC.................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.........................................GTGCAGTGGGTAGGAGGC.................................................................................................................................................................................................................................................................. 18 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - 0.50 - - - - - - -
..............................................................................................................................................................................................................AGAGCTGAAGGGGTGGGG............................................................................................. 18 4 0.25 0.25 - - - - - - - - - - - - 0.25 - - - - - - - - - - - - - - - - - -

Antisense strand
CCTGAGGTCGCGGATTCCGAAGCCCCGGAGGCAGATTCCGAGTGCAGTGGGTAGGAGGCTGTCCTCCGGGCCTCGCCGACCATCCTGCGGACGGACTGGGCGTGGCCGGAGGAACTGTCCCGAAGCTGTGGGGCCTTTCATTTGGCCTTGGGAAGAGCAGCAGGAGAAGGCGGGGCTCCTCCCCACGTTTCGGCCGAAGTGGCTGCAGAGCTGAAGGGGTGGGGCCTCGGGGTAGCCCGGTGAGTGGATCCTGTCCTCTCTCCTCAGCCCTGGACCATAGCCAGCACACACTGAGGCAGGAATGGCCCCGAGACCTC
.....................................................................................................................................((((((.(((((((..((((.((((.((........))...)))).))))........)))))))..((((....))))))))))...................................................................................................
...................................................................................................................................132.......................................................................................222.............................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT3()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
.........................................................GCTGTCCTCCGGGCCTCGCCGA.............................................................................................................................................................................................................................................. 22 1 8.00 8.00 6.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................CTGTCCTCCGGGCCTCGCCGAa.............................................................................................................................................................................................................................................. 22 a 8.00 0.00 2.00 - - - - 2.00 - - 3.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................TGTCCTCCGGGCCTCGCCGA.............................................................................................................................................................................................................................................. 20 1 7.00 7.00 - 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..........................................................CTGTCCTCCGGGCCTCGCCGA.............................................................................................................................................................................................................................................. 21 1 5.00 5.00 - - - 2.00 - - 1.00 - - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - -
.........................................................CTGTCCTCCGGGCCTCGCCGAt.............................................................................................................................................................................................................................................. 22 t 4.00 0.00 1.00 - - 2.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................GCCGGAGGAACTGTCCCGA.................................................................................................................................................................................................. 19 1 4.00 4.00 - - 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................CTGTCCTCCGGGCCTCGCCGACta............................................................................................................................................................................................................................................. 24 ta 3.00 0.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................GCTGTCCTCCGGGCCTCGCCGAaaa.............................................................................................................................................................................................................................................. 25 aaa 2.00 0.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................GTCCTCCGGGCCTCGCCGAC............................................................................................................................................................................................................................................. 20 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................CTGTCCTCCGGGCCTCGCCGAtat.............................................................................................................................................................................................................................................. 24 tat 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................TGTCCTCCGGGCCTCGCCGAC............................................................................................................................................................................................................................................. 21 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................TTTCGGCCGAAGTGGCTGCAGAGCTtgt......................................................................................................... 28 tgt 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
........................................................CTGTCCTCCGGGCCTCGCCGAtt.............................................................................................................................................................................................................................................. 23 tt 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................GTCCTCCGGGCCTCGCCGAttat.............................................................................................................................................................................................................................................. 23 ttat 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................CTGTCCTCCGGGCCTCGCCGAaa.............................................................................................................................................................................................................................................. 23 aa 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................GCTGTCCTCCGGGCCTCGCCGAaa.............................................................................................................................................................................................................................................. 24 aa 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................CTGTCCTCCGGGCCTCGCCGAC............................................................................................................................................................................................................................................. 22 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................GAGGCTGTCCTCCGGGCCT.................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................CTGTCCTCCGGGCCTCGCCGAaaa.............................................................................................................................................................................................................................................. 24 aaa 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................GCTGTCCTCCGGGCCTCGCCGAa.............................................................................................................................................................................................................................................. 23 a 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
......................................................CTGTCCTCCGGGCCTCGCCGAtaac.............................................................................................................................................................................................................................................. 25 taac 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................GCTGTCCTCCGGGCCTCGCCGAC............................................................................................................................................................................................................................................. 23 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................GTGGCCGGAGGAACTGTCCCG................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TTTCGGCCGAAGTGGCTGCAGAGCTGAA...................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -