(1)
OTHER.ip
(6)
OTHER.mut
(4)
OVARY
(2)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(25)
TESTES

Sense strand
CGCTTTAACCTGCTGCCCACGGAGCAGCCCCGGATACAGGTGACTGGTTGGTAAGTGGTCCCTTTAAGGGAAGGGGATGTAGCTCAGTGGCAGACTACAGGCTTCGCATGGCTGAAGTCCTGAGGGCTTCAGTCTAAATCTCTCCATATTCCTCTCCCCAAAACAAAACAGTTAAATGAAGCTTCCACCTTTTGTCTCTTCACGCGCACTTGGCATAGATC
........................................................................(((((.((((((..((((....)))).))))..))..(((((((((((...)))))))))))....................)))))..............................................................
.......................................................................72.................................................................................................171................................................
Size Perfect hit Total Norm Perfect Norm SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT1()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR037897(GSM510433)
ovary_rep2. (ovary)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR037899(GSM510435)
ovary_rep4. (ovary)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
........................................................................GGGGATGTAGCTCAGTGGagaa............................................................................................................................... 22 agaa 20.00 0.00 13.00 5.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGA............................................................................................................................... 22 8 17.88 17.88 5.50 7.12 1.38 0.75 - 1.12 - - - - 0.38 0.25 0.12 0.25 0.12 - 0.12 0.12 - - - 0.12 0.12 0.12 0.12 - 0.12 - -
........................................................................GGGGATGTAGCTCtta..................................................................................................................................... 16 tta 10.00 0.00 2.00 2.00 4.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................ACAGGTGACTGGTTGGTAAGTGG................................................................................................................................................................... 23 1 7.00 7.00 - - - - 7.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGagt................................................................................................................................ 21 agt 5.00 0.00 3.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGtaga................................................................................................................................ 21 taga 3.00 0.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGaagt............................................................................................................................... 22 aagt 3.00 0.00 2.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAG................................................................................................................................ 21 11 2.64 2.64 1.09 0.73 0.18 0.18 - - - - - - - 0.09 - - 0.09 0.09 - - 0.09 0.09 - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGtag................................................................................................................................. 20 tag 2.00 0.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGaat................................................................................................................................ 21 aat 2.00 0.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGgagt............................................................................................................................... 22 gagt 2.00 0.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCttat.................................................................................................................................... 17 ttat 2.00 0.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGagat............................................................................................................................... 22 agat 2.00 0.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................CCTTTAAGGGAAGGGGATGTAGCTCAG...................................................................................................................................... 27 1 2.00 2.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGagc................................................................................................................................ 21 agc 2.00 0.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGagtg............................................................................................................................... 22 agtg 2.00 0.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGttt................................................................................................................................. 20 ttt 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGttat................................................................................................................................ 21 ttat 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGggaa............................................................................................................................... 22 ggaa 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCttaa.................................................................................................................................... 17 ttaa 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................GGAAGGGGATGTAagct........................................................................................................................................ 17 agct 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGagcg............................................................................................................................... 22 agcg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTcgta................................................................................................................................. 20 cgta 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGgagc............................................................................................................................... 22 gagc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGACcgc........................................................................................................................... 26 cgc 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGtgag................................................................................................................................ 21 tgag 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAcagg................................................................................................................................... 18 cagg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTcgt.................................................................................................................................. 19 cgt 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................AGGGGATGTAGCTCAaa..................................................................................................................................... 17 aa 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGatt................................................................................................................................ 21 att 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGgcga............................................................................................................................... 22 gcga 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCtatt.................................................................................................................................... 17 tatt 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCtttc.................................................................................................................................... 17 tttc 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGC.................................................................................................................................. 19 19 0.95 0.95 0.11 0.37 0.11 0.11 - - 0.05 - - - - - - - - - - - - 0.05 0.05 - - - - - - 0.05 0.05
........................................................................GGGGATGTAGCTCAGTGGCA................................................................................................................................. 20 16 0.81 0.81 0.25 0.12 0.12 0.12 - - - 0.06 - - - - - - - - 0.06 - 0.06 - - - - - - - - - -
.........................................................................GGGATGTAGCTCAGTGGCAGA............................................................................................................................... 21 17 0.65 0.65 0.29 0.29 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgg............................................................................................................................. 24 gg 0.50 17.88 0.12 0.12 - - - - - - - - - - 0.12 - - 0.12 - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGcgc............................................................................................................................. 24 cgc 0.36 2.64 0.27 - 0.09 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................AGGGGATGTAGCTCAGTGG................................................................................................................................... 19 11 0.27 0.27 - - - 0.09 - 0.09 - - - - - - - - - - - - - - 0.09 - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgaaa........................................................................................................................... 26 gaaa 0.25 17.88 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAaa............................................................................................................................. 24 aa 0.25 17.88 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAtt............................................................................................................................. 24 tt 0.25 17.88 - - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgcgc........................................................................................................................... 26 gcgc 0.25 17.88 - - - - - - - 0.12 - - - - - - - - - - - - - - - - - 0.12 - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAt.............................................................................................................................. 23 t 0.12 17.88 - - - 0.12 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgcag........................................................................................................................... 26 gcag 0.12 17.88 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAat............................................................................................................................. 24 at 0.12 17.88 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgct............................................................................................................................ 25 gct 0.12 17.88 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAta............................................................................................................................. 24 ta 0.12 17.88 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgta............................................................................................................................ 25 gta 0.12 17.88 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgga............................................................................................................................ 25 gga 0.12 17.88 - - - - - - - - 0.12 - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgcc............................................................................................................................ 25 gcc 0.12 17.88 - 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgccg........................................................................................................................... 26 gccg 0.12 17.88 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgagc........................................................................................................................... 26 gagc 0.12 17.88 - - - - - - - 0.12 - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAaagc............................................................................................................................. 24 aagc 0.12 0.81 0.06 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgctc........................................................................................................................... 26 gctc 0.12 17.88 - - - - - - - 0.12 - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGAgcca........................................................................................................................... 26 gcca 0.12 17.88 0.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCcgag.............................................................................................................................. 23 cgag 0.11 0.95 - 0.05 0.05 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAGc............................................................................................................................... 22 c 0.09 2.64 - - - - - - - - - - 0.09 - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCAcag.............................................................................................................................. 23 cag 0.06 0.81 - - 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCgag............................................................................................................................... 22 gag 0.05 0.95 0.05 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCgagc.............................................................................................................................. 23 gagc 0.05 0.95 - - - - - - - - - - - - 0.05 - - - - - - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCgggc.............................................................................................................................. 23 gggc 0.05 0.95 - - - - - - - - - - - - - - - - - 0.05 - - - - - - - - - - -
........................................................................GGGGATGTAGCTCAGTGGCtacc.............................................................................................................................. 23 tacc 0.05 0.95 - - - - - - - - 0.05 - - - - - - - - - - - - - - - - - - - -

Antisense strand
CGCTTTAACCTGCTGCCCACGGAGCAGCCCCGGATACAGGTGACTGGTTGGTAAGTGGTCCCTTTAAGGGAAGGGGATGTAGCTCAGTGGCAGACTACAGGCTTCGCATGGCTGAAGTCCTGAGGGCTTCAGTCTAAATCTCTCCATATTCCTCTCCCCAAAACAAAACAGTTAAATGAAGCTTCCACCTTTTGTCTCTTCACGCGCACTTGGCATAGATC
........................................................................(((((.((((((..((((....)))).))))..))..(((((((((((...)))))))))))....................)))))..............................................................
.......................................................................72.................................................................................................171................................................
Size Perfect hit Total Norm Perfect Norm SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT1()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR037897(GSM510433)
ovary_rep2. (ovary)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR037899(GSM510435)
ovary_rep4. (ovary)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)