| Gene: Cc2d1a | ID: uc009mma.1_intron_4_0_chr8_86657940_r | SPECIES: mm9 |
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(1) OTHER.mut |
(2) PIWI.ip |
(9) TESTES |
| AAAGCAAAGGCTCCTCTCATACCGGCGTCTTCAAGGGAAGCAGGCAACAGGTAAGTCTAGGCTGCGCCACACTGAAGAGAGTCCTCTCTTGTCCCAGTTCCTCGTGTAGTTTCCATCAGTCATACCAGACCGTATCCCATCTGACCTCAGAGCTAACTTGATACCCTTCTCTTGGGGAATTCAGTTTACAAACCTCGACTTGATCTTTAAGACCCTTTGTGATCTGACCATTGTCAGCATATCCAGCTTCCCTGCCTTCAATCTTGTACTTTCTTCTGTCTCTGTCTCTCTCCCTCATTCATGTCCCCTGCCTCCCCTTCCTGAGTGACGGGATGACAGGCAGACTGCAGACCTTCCTGGTCTCTGGATGTCTTGAGATTGCTTCTGAGATTGCTCTAGCCCCACCCTTCCTGTACCTCTGCCCGCTGACTCCTGTGGATCCCCAGCACTTCCCCTGTAGCCCCTCAACCCCTCTCTACCTGCAGATCAGCACGGCCCCTGCATAGCCTTAGCGTGTTGGCCTTTGACCAAGAGC .................................................................................................................................................................................................................................................................................................................................................................................................((((...(((.(((.............(((....)))..((((..(((...)))....)))).......))).)))..)))).................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................386................................................................................................485................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) |
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| ................................................................................................................................................................................................................................................................................................................................................................CTTCCTGGTCTCTGGATGTCTTGAGATTGCTTCTGAGATTGCTCTAGCCCCA................................................................................................................................... | 52 | 1 | 39.00 | 39.00 | 39.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................GTGACGGGATGACAGGCAGA............................................................................................................................................................................................... | 20 | 1 | 6.00 | 6.00 | - | 6.00 | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCCAGCACTTCCacca.............................................................................. | 20 | acca | 2.00 | 0.00 | - | - | 1.00 | - | 1.00 | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCAGCACTTCCacca.............................................................................. | 18 | acca | 2.00 | 0.00 | - | - | 1.00 | - | 1.00 | - | - | - | - |
| ..................................................................................................................................CGTATCCCATCctcg...................................................................................................................................................................................................................................................................................................................................................................................................... | 15 | ctcg | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................CAGGCAGACTGCAGACCTTCC.................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - |
| AAAGCAAAGGCTCCTCTCATACCGGCGTCTTCAAGGGAAGCAGGCAACAGGTAAGTCTAGGCTGCGCCACACTGAAGAGAGTCCTCTCTTGTCCCAGTTCCTCGTGTAGTTTCCATCAGTCATACCAGACCGTATCCCATCTGACCTCAGAGCTAACTTGATACCCTTCTCTTGGGGAATTCAGTTTACAAACCTCGACTTGATCTTTAAGACCCTTTGTGATCTGACCATTGTCAGCATATCCAGCTTCCCTGCCTTCAATCTTGTACTTTCTTCTGTCTCTGTCTCTCTCCCTCATTCATGTCCCCTGCCTCCCCTTCCTGAGTGACGGGATGACAGGCAGACTGCAGACCTTCCTGGTCTCTGGATGTCTTGAGATTGCTTCTGAGATTGCTCTAGCCCCACCCTTCCTGTACCTCTGCCCGCTGACTCCTGTGGATCCCCAGCACTTCCCCTGTAGCCCCTCAACCCCTCTCTACCTGCAGATCAGCACGGCCCCTGCATAGCCTTAGCGTGTTGGCCTTTGACCAAGAGC .................................................................................................................................................................................................................................................................................................................................................................................................((((...(((.(((.............(((....)))..((((..(((...)))....)))).......))).)))..)))).................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................386................................................................................................485................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................TCCTCGTGTAGTTTCCATCAGTCATA........................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - |
| .................................AGGGAAGCAGGCAACAGGTAAGTCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 |
| ............................................................................................CCCAGTTCCTCGTGTAGTTTCCATCA................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - |
| ..............................................................................................................................................................................................................................................................................TTCTTCTGTCTCTGTCTCTCTCCCTCA.............................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................................................................................................................TACCCTTCTCTTGGGGAATTCAGTTTACAA........................................................................................................................................................................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - |
| .......AGGCTCCTCTCATACCGGCGTCTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................................................................CCATCTGACCTCAGAGCTAACTTGATA.................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - |