| Gene: Smarca5 | ID: uc009mja.1_intron_14_0_chr8_83244697_r.5p | SPECIES: mm9 |
|
|
(8) OTHER.mut |
(1) OVARY |
(5) PIWI.ip |
(2) PIWI.mut |
(22) TESTES |
| ATACAAATAATTGCCTTGGGGATCAAAAGCTAGTTGAGAGGCTTCATATGGTAAGTATGGTTAGAACATACTTTTAATAGGAAAGTATTTTCATTATTTTACTGTTAACAGAAGTATGGTATTGTGTGTGTGTGTGTATGTGTATGTATGTGTATATAACATGTATATATGTATATATACACATGTTATGTATATATATATATATACATGTATATATGTATATATATGTGTGTGTGTGTGTGTATGTTTG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT4() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTAAGTATGGTTAGAACATACTTTTAATAGGAAAGTATTTTCATTATTTTAC.................................................................................................................................................... | 52 | 1 | 95.00 | 95.00 | 95.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TAATTGCCTTGGGGATCAAAAGCTA.......................................................................................................................................................................................................................... | 25 | 7 | 1.43 | 1.43 | - | 0.57 | - | - | - | - | 0.29 | 0.29 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | 0.14 |
| .......TAATTGCCTTGGGGATCAAAcgct........................................................................................................................................................................................................................... | 24 | cgct | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TTGCCTTGGGGATCAAAAGCTAGTTGAGAGt................................................................................................................................................................................................................. | 31 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............GCCTTGGGGATCAAAAGCTAGTTGAGAt.................................................................................................................................................................................................................. | 28 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TTGGGGATCAAAAGCTAGTTGAGAGGCTTC............................................................................................................................................................................................................. | 30 | 7 | 0.86 | 0.86 | - | 0.71 | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - |
| .......TAATTGCCTTGGGGATCAAAAGCT........................................................................................................................................................................................................................... | 24 | 7 | 0.71 | 0.71 | - | 0.14 | - | - | - | - | 0.29 | - | - | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - |
| .TACAAATAATTGCCTTGGGGATCAAAAG............................................................................................................................................................................................................................. | 28 | 7 | 0.43 | 0.43 | - | - | 0.29 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...CAAATAATTGCCTTGGGGATCAAAAGC............................................................................................................................................................................................................................ | 27 | 7 | 0.29 | 0.29 | - | 0.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TGGGGATCAAAAGCTAGTTGAGAGGCTT.............................................................................................................................................................................................................. | 28 | 7 | 0.29 | 0.29 | - | 0.14 | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TAATTGCCTTGGGGATCAAAAGCTAG......................................................................................................................................................................................................................... | 26 | 7 | 0.29 | 0.29 | - | - | 0.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TGGGGATCAAAAGCTAGTTGAGAGGCTTC............................................................................................................................................................................................................. | 29 | 7 | 0.29 | 0.29 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - |
| .......TAATTGCCTTGGGGATCAAAAGCTAGT........................................................................................................................................................................................................................ | 27 | 7 | 0.29 | 0.29 | - | - | - | - | - | - | - | - | 0.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TAATTGCCTTGGGGATCAAAAGC............................................................................................................................................................................................................................ | 23 | 7 | 0.29 | 0.29 | - | - | - | - | - | - | - | 0.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TGGGGATCAAAAGCTAG......................................................................................................................................................................................................................... | 17 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - |
| .TACAAATAATTGCCTTGGGGATCAAAAGCT........................................................................................................................................................................................................................... | 30 | 7 | 0.14 | 0.14 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................GGGGATCAAAAGCTAGTTGAGAGGCTTC............................................................................................................................................................................................................. | 28 | 7 | 0.14 | 0.14 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TAATTGCCTTGGGGATCAAAA.............................................................................................................................................................................................................................. | 21 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............GCCTTGGGGATCAAAAGCTAGTTGAGAGG................................................................................................................................................................................................................. | 29 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TGGGGATCAAAAGCTAGTTGAGAGGCTTCAT........................................................................................................................................................................................................... | 31 | 7 | 0.14 | 0.14 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........AATTGCCTTGGGGATCAAAAGCTA.......................................................................................................................................................................................................................... | 24 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - |
| ..........TTGCCTTGGGGATCAAAAGCTAGTTG...................................................................................................................................................................................................................... | 26 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TCAAAAGCTAGTTGAGAGGCTTCATATG........................................................................................................................................................................................................ | 28 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............CCTTGGGGATCAAAAGCTAGTTGAGAGG................................................................................................................................................................................................................. | 28 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - |
| ..........................AAGCTAGTTGAGAGGCTT.............................................................................................................................................................................................................. | 18 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - |
| ........AATTGCCTTGGGGATCAAAAG............................................................................................................................................................................................................................. | 21 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - |
| .TACAAATAATTGCCTTGGGGATCAAA............................................................................................................................................................................................................................... | 26 | 7 | 0.14 | 0.14 | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TTGCCTTGGGGATCAAAAGCTAGTT....................................................................................................................................................................................................................... | 25 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TGGGGATCAAAAGCTAGTTGAGAGGCT............................................................................................................................................................................................................... | 27 | 7 | 0.14 | 0.14 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........TGCCTTGGGGATCAAAAGCTAGTTG...................................................................................................................................................................................................................... | 25 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - |
| ............GCCTTGGGGATCAAAAGCTAGTTGAG.................................................................................................................................................................................................................... | 26 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - |
| .......TAATTGCCTTGGGGATCAAAAG............................................................................................................................................................................................................................. | 22 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........ATTGCCTTGGGGATCAAA............................................................................................................................................................................................................................... | 18 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TTGGGGATCAAAAGCTAGTTGAGAGGCTT.............................................................................................................................................................................................................. | 29 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - |
| .TACAAATAATTGCCTTGGGGATCAAAAGC............................................................................................................................................................................................................................ | 29 | 7 | 0.14 | 0.14 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TGGGGATCAAAAGCTAGTTGAGAGGC................................................................................................................................................................................................................ | 26 | 7 | 0.14 | 0.14 | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TCAAAAGCTAGTTGAGAGGCTTCATA.......................................................................................................................................................................................................... | 26 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TCAAAAGCTAGTTGAG.................................................................................................................................................................................................................... | 16 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - |
| .......TAATTGCCTTGGGGATCAAAAGCTAt......................................................................................................................................................................................................................... | 26 | t | 0.14 | 1.43 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - |
| ..............CTTGGGGATCAAAAGCTAGTTGAGAGGCTTCAT........................................................................................................................................................................................................... | 33 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - |
| ATACAAATAATTGCCTTGGGGATCAAAAGCTAGTTGAGAGGCTTCATATGGTAAGTATGGTTAGAACATACTTTTAATAGGAAAGTATTTTCATTATTTTACTGTTAACAGAAGTATGGTATTGTGTGTGTGTGTGTATGTGTATGTATGTGTATATAACATGTATATATGTATATATACACATGTTATGTATATATATATATATACATGTATATATGTATATATATGTGTGTGTGTGTGTGTATGTTTG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT4() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................................................................GTGTGTGTGTATGTTgtaa.. | 19 | gtaa | 3.00 | 0.00 | - | 1.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..ACAAATAATTGCCTTGGGGATCAAAAGCTA.......................................................................................................................................................................................................................... | 30 | 7 | 0.29 | 0.29 | - | 0.29 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................GGATCAAAAGCTAGTTGAGAGGCTTCATA.......................................................................................................................................................................................................... | 29 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - |
| ....................GATCAAAAGCTAGTTGAGAGGCTTCATA.......................................................................................................................................................................................................... | 28 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - |