(4)
OTHER.mut
(4)
PIWI.ip
(2)
PIWI.mut
(22)
TESTES

Sense strand
TAAGACAGCAGAATTTCCAGTATGCAACAGGCTGAAGGAGCGGGAAGAAATGTGCTTTGTATAAAAATGGGAAGTTTGTTATATGAAAGGTTGGTTCTGTATTATTTATCAGCGGAAGAACTGGTGTCCAGGAGGAATGCTCTTTCCCACACTGTGTTATCCTCGATAATACCCACCTTTCTTTTTGTTACTTTAACCAGGGGGAAATAAACGCCTCCCTGATGTTCTTCCTCTAGTCGAGACTGCTTCC
.....................................................(((((.(((....))).)))))..............((((((............)))))).......((((...)))).......................................................................................................................
..................................................51...............................................................................132....................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
......................................................................................................TATTTATCAGCGGAAGAACTGGTGTC.......................................................................................................................... 26 1 9.00 9.00 4.00 1.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................TTATTTATCAGCGGAAGAACTGGTGT........................................................................................................................... 26 1 9.00 9.00 2.00 2.00 3.00 2.00 - - - - - - - - - - - - - - - - - -
.................................................................................................TGTATTATTTATCAGCGGAAGAACTGGT............................................................................................................................. 28 1 8.00 8.00 3.00 3.00 1.00 - - - - - - - - - - - - - - - 1.00 - - -
......................TGCAACAGGCTGAAGGAGCGGGAAG........................................................................................................................................................................................................... 25 1 8.00 8.00 2.00 3.00 2.00 - - - - - - - - - - - - - - - - - 1.00 -
.................................................................................................TGTATTATTTATCAGCGGAAGAACTGG.............................................................................................................................. 27 1 7.00 7.00 2.00 1.00 3.00 - - - - - - - - - 1.00 - - - - - - - - -
......................TGCAACAGGCTGAAGGAGCGGGAAGA.......................................................................................................................................................................................................... 26 1 6.00 6.00 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - -
......................TGCAACAGGCTGAAGGAGCGGGAAGAA......................................................................................................................................................................................................... 27 1 6.00 6.00 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - -
.................................................................................................TGTATTATTTATCAGCGGAAGAACTG............................................................................................................................... 26 1 6.00 6.00 1.00 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................TTATTTATCAGCGGAAGAACTGGTGTC.......................................................................................................................... 27 1 6.00 6.00 2.00 1.00 1.00 1.00 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................TCTGTATTATTTATCAGCGGAAGAACTG............................................................................................................................... 28 1 5.00 5.00 2.00 3.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................TCAGCGGAAGAACTGGTGTCCAGGAG.................................................................................................................... 26 1 4.00 4.00 - 4.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TATCAGCGGAAGAACTGGTGTCCAGGA..................................................................................................................... 27 1 4.00 4.00 1.00 1.00 2.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................................TTATTTATCAGCGGAAGAACTGGTG............................................................................................................................ 25 1 4.00 4.00 1.00 1.00 - - - 2.00 - - - - - - - - - - - - - - - -
..........................................................................................................TATCAGCGGAAGAACTGGTGTCCAGG...................................................................................................................... 26 1 3.00 3.00 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................TTTATCAGCGGAAGAACTGGTGTCCA........................................................................................................................ 26 1 3.00 3.00 - - - 2.00 1.00 - - - - - - - - - - - - - - - - -
...............TCCAGTATGCAACAGGCTGAAGGAGCGG............................................................................................................................................................................................................... 28 1 3.00 3.00 1.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - -
.................................................................................................TGTATTATTTATCAGCGGAAGAACTGt.............................................................................................................................. 27 t 2.00 6.00 - 2.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................TATTTATCAGCGGAAGAACTGGTGT........................................................................................................................... 25 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................TCAGCGGAAGAACTGGTGTCCAGGA..................................................................................................................... 25 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................TAAAAATGGGAAGTTTGTTATATGAAA.................................................................................................................................................................. 27 1 2.00 2.00 - - - - - - - - - - - - - 1.00 - 1.00 - - - - - -
...................................................................TGGGAAGTTTGTTATATGAAAGGTTGGT........................................................................................................................................................... 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - -
....................TATGCAACAGGCTGAAGGAGCGGGA............................................................................................................................................................................................................. 25 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................CTGTATTATTTATCAGCGGAAGAACTG............................................................................................................................... 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TAAACGCCTCCCTGATGTTCTTCCTC................. 26 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................TGATGTTCTTCCTCTAGTCGAGACTGC.... 27 1 2.00 2.00 - - - - - - 1.00 - - - - - - 1.00 - - - - - - - -
...........................................................................................TGGTTCTGTATTATTTATCAGCGGAA..................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................AGGAGCGGGAAGAAATGTGCTTTGTATA........................................................................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................TCAGCGGAAGAACTGGTGTCCAGGAGGt.................................................................................................................. 28 t 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
....................TATGCAACAGGCTGAAGGAGCGGGga............................................................................................................................................................................................................ 26 ga 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................TGTATTATTTATCAGCGGAAGAACTGGTGT........................................................................................................................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................TATGAAAGGTTGGTTCTGTATTATTTATCAGCG........................................................................................................................................ 33 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................GCAACAGGCTGAAGGAGCGGGAAGc.......................................................................................................................................................................................................... 25 c 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - -
........................CAACAGGCTGAAGGAGCGGGA............................................................................................................................................................................................................. 21 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................GCAACAGGCTGAAGGAGCGG............................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00
..............................................................................................................AGCGGAAGAACTGGTGTCCAGGA..................................................................................................................... 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................TATTTATCAGCGGAAGAACTGGTGTCC......................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................TGGGAAGTTTGTTATATGAAAGGTTGGTT.......................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGTTCTTCCTCTAGTCGAGACTGCTTC. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
......................TGCAACAGGCTGAAGGAGCGGGAAGt.......................................................................................................................................................................................................... 26 t 1.00 8.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................AAATGTGCTTTGTATAAAAATGGGA.................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................TTTATCAGCGGAAGAACTGGTGTCCAG....................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TGGTGTCCAGGAGGAATGCTCTTTCCC...................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TATCCTCGATAATACCCACCTTTCTTT.................................................................. 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................................................................GAACTGGTGTCCAGGAGGAATGCT............................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - -
...........................................................................................TGGTTCTGTATTATTTATCAGCGGAAGAAC................................................................................................................................. 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................TATGAAAGGTTGGTTCTGTATTATTTATCA........................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................TATAAAAATGGGAAGTTTGTTATATG..................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TATCAGCGGAAGAACTGGTGTCCAGGt..................................................................................................................... 27 t 1.00 3.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................TACTTTAACCAGGGGGAAATAAACGCCT.................................. 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
...................................................................................................................................................................................TCTTTTTGTTACTTTAACCAGGGGGA............................................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................................................TTATCAGCGGAAGAACTGGTGTCCAGG...................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
......................TGCAACAGGCTGAAGGAGCGGGAAGAAt........................................................................................................................................................................................................ 28 t 1.00 6.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.........................................................................................................TTATCAGCGGAAGAACTGGTGTCCAGGA..................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
......................TGCAACAGGCTGAAGGAGCGGGAA............................................................................................................................................................................................................ 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................AAAGGTTGGTTCTGTATTA.................................................................................................................................................. 19 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................................................................ATCAGCGGAAGAACTGGTGTCCAGGA..................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
....................................GGAGCGGGAAGAAATGTGCTTTGTATA........................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - -
..............................................................................................................................................................................................................................TGTTCTTCCTCTAGTCGAGACTGCTTCC 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
..................AGTATGCAACAGGCTGAAGGAGCGGG.............................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TATCAGCGGAAGAACTGGTGTCCAGGAG.................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
............................................................................................................TCAGCGGAAGAACTGGTGTCCAGGAGGAAT................................................................................................................ 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................AGCGGGAAGAAATGTGCTTTG............................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - -
................CCAGTATGCAACAGGCTGAAGGAGCGG............................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................TCTTTTTGTTACTTTAACCAGGGGGAA............................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - -
......................................................................................................TATTTATCAGCGGAAGAACTGGTG............................................................................................................................ 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................GAAGTTTGTTATATGAAAGGTTGGTTCTGTA..................................................................................................................................................... 31 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................TGGGAAGTTTGTTATATGAAAGGTTG............................................................................................................................................................. 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - -

Antisense strand
TAAGACAGCAGAATTTCCAGTATGCAACAGGCTGAAGGAGCGGGAAGAAATGTGCTTTGTATAAAAATGGGAAGTTTGTTATATGAAAGGTTGGTTCTGTATTATTTATCAGCGGAAGAACTGGTGTCCAGGAGGAATGCTCTTTCCCACACTGTGTTATCCTCGATAATACCCACCTTTCTTTTTGTTACTTTAACCAGGGGGAAATAAACGCCTCCCTGATGTTCTTCCTCTAGTCGAGACTGCTTCC
.....................................................(((((.(((....))).)))))..............((((((............)))))).......((((...)))).......................................................................................................................
..................................................51...............................................................................132....................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
.................ATGCAACAGGCTGgccc........................................................................................................................................................................................................................ 17 gccc 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TCCTCTAGTCGcgac........... 15 cgac 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - -
......................................................................................................................................................................................................................CCTGATGTTCTTCCTaga.................. 18 aga 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - -