| Gene: Tmem38a | ID: uc009mgi.1_intron_3_0_chr8_75105172_f.3p | SPECIES: mm9 |
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(4) OTHER.mut |
(4) PIWI.ip |
(1) PIWI.mut |
(13) TESTES |
| GATTGCCCAGTTCTGCTCTCCAGTGTGAGCTCAGACTGAACTTCTCAACCCAGTGTCAGCTAACAAGCTCTCAGGCAAGCAGGCAGCTGCCAGCCGGGAAAGACAGGTCTGGTGCCTCCTGGTCAGTCAGCTGTGGCTCTGGGGAGCTTTATATGAAGCTCTGACTGAGAATGGCCGTGGTTATTTATATCTTACCCCAGCCCCACCAAGGCCAGTCTGTATGGAGCCATCCTGTTCACCTTGCAGCAGA .........................................................................................................((.(((..(((....)))))))).((..(((((((.(((((((((....)))))))...)).)))...))))..))..................................................................... ........................................................................................................105..........................................................................182.................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................TATGAAGCTCTGACTGAGAATGGCCGT........................................................................ | 27 | 1 | 10.00 | 10.00 | 4.00 | 3.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | 1.00 |
| ...........................................................................................................................................................................................................CACCAAGGCCAGTCTGTATG........................... | 20 | 1 | 5.00 | 5.00 | - | - | 5.00 | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TATATGAAGCTCTGACTGAGAATGGCC.......................................................................... | 27 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................TATGAAGCTCTGACTGAGAATGGCCGg........................................................................ | 27 | g | 2.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TTATATGAAGCTCTGACTGAGAATGGCC.......................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................TATGAAGCTCTGACTGAGAATGGCCG......................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TATATGAAGCTCTGACTGAGAATGGCCt......................................................................... | 28 | t | 1.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................................................................TGGTGCCTCCTGGTCAGTCAGCTGTGG.................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................TGGTCAGTCAGCTGTGGCTCTGGGG.......................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .......................................................................................................................................................TATGAAGCTCTGACTGAGAATGGCCGTG....................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................................................................................................................TATATGAAGCTCTGACTGAGAATGGC........................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TTATATGAAGCTCTGACTGAGAATGGC........................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................GAAGCTCTGACTGAGAATGGCCGTGGTT.................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TATATGAAGCTCTGACTGAGAATGGCCG......................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................AAGGCCAGTCTGTATGGA......................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .........................................................................................................................................................TGAAGCTCTGACTGAGAATGGCCG......................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TATATGAAGCTCTGACTGAGAATGGCCGTG....................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .........................................................................................................................................................TGAAGCTCTGACTGAGAATGGCCGTa....................................................................... | 26 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TGTGAGCTCAGACTGAACTTCTCAAC......................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................................................................................................TATATGAAGCTCTGACTGAGAATGGCCGT........................................................................ | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................TGGAGCCATCCTGTTCACCTTGCAGC... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| GATTGCCCAGTTCTGCTCTCCAGTGTGAGCTCAGACTGAACTTCTCAACCCAGTGTCAGCTAACAAGCTCTCAGGCAAGCAGGCAGCTGCCAGCCGGGAAAGACAGGTCTGGTGCCTCCTGGTCAGTCAGCTGTGGCTCTGGGGAGCTTTATATGAAGCTCTGACTGAGAATGGCCGTGGTTATTTATATCTTACCCCAGCCCCACCAAGGCCAGTCTGTATGGAGCCATCCTGTTCACCTTGCAGCAGA .........................................................................................................((.(((..(((....)))))))).((..(((((((.(((((((((....)))))))...)).)))...))))..))..................................................................... ........................................................................................................105..........................................................................182.................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................CAGACTGAACTTCTCAACCCAGTGTCA................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................................................................................................................................................TGAAGCTCTGACTGAgag.................................................................................. | 18 | gag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |