(5)
OTHER.mut
(4)
PIWI.ip
(2)
PIWI.mut
(29)
TESTES

Sense strand
TGGAAAGAATCCTGAAGAAGGCATCAAAAACCCACAAACAGAGAGTGGAGGTGAGCCCTGCACCTGTCAGCAGACTGAGCCATGGGGGGGTAGCCAGAGCCCAGACAGTGCAGCTTGGACTGTTGGAGCCCACCCTCAGGCATGGCTTGTTTTGGGTGCTGTGAGACCTGTGGTGGAGTATGTGAGATGGTCTGGGTGCAGGCGGCGATATTGCCATCTGGTTCACACTGATGTGGTCTATCTTCTACAGGACTTCAACCGACACCTGGATACACTCACTGAGCACTATGACATTCCCAA
......................................................((((((((((((((.(((.(((..((((((((..((((.(((((((...((((((.((...)).)))))).(((((..((....))...)))))))))))).))))......))))))))..))).)))..))).....)))))))))..))..............................................................................................
.....................................................54.........................................................................................................................................................209.........................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT4()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
....................................................................................................................................................................................TGTGAGATGGTCTGGGTGCAGGCGG............................................................................................... 25 1 11.00 11.00 - - 3.00 2.00 - 2.00 3.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................GGCTTGTTTTGGGTGCTGTGAGACCTG.................................................................................................................................. 27 1 5.00 5.00 - - - - - - - - 5.00 - - - - - - - - - - - - - - - - - - - -
..........................................................TGCACCTGTCAGCAGACTGAGCCATG........................................................................................................................................................................................................................ 26 1 5.00 5.00 4.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TGTGAGATGGTCTGGGTGCAGGCGGC.............................................................................................. 26 1 4.00 4.00 - - - 1.00 - - - 2.00 - - - - - - - - - - - - - - - - - 1.00 - - -
............................................................................................................TGCAGCTTGGACTGTTGGAGCCCA........................................................................................................................................................................ 24 1 3.00 3.00 - - - - - 3.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................TGGATACACTCACTGAGCACTATGACATTC.... 30 1 3.00 3.00 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................TGAGCCCTGCACCTGTCAGCAGACTGA.............................................................................................................................................................................................................................. 27 1 3.00 3.00 1.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - -
..............................................................................................................................................TGGCTTGTTTTGGGTGCTGTGAGACC.................................................................................................................................... 26 1 3.00 3.00 - - 1.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - - -
................................................................TGTCAGCAGACTGAGCCATGGGGGGt.................................................................................................................................................................................................................. 26 t 3.00 0.00 - - - - - - - - - - - 1.00 - 2.00 - - - - - - - - - - - - - - -
...................................................................................................................TGGACTGTTGGAGCCCACCCTCAGGCAT............................................................................................................................................................. 28 1 3.00 3.00 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................TGAGATGGTCTGGGTGCAGGCGGaaat........................................................................................... 27 aaat 2.00 0.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGGACTGTTGGAGCCCACCCTCAGGC............................................................................................................................................................... 26 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TGGGTGCTGTGAGACCTGTGGTGGAaa......................................................................................................................... 27 aa 2.00 0.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGGACTGTTGGAGCCCACCCTCAGGCATG............................................................................................................................................................ 29 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................TGAGACCTGTGGTGGAGTATGTGAGA................................................................................................................. 26 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................TGTGAGACCTGTGGTGGAGTATGTG.................................................................................................................... 25 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....AAGAATCCTGAAGAAGGCATCAAAAACCCACA........................................................................................................................................................................................................................................................................ 32 1 2.00 2.00 - - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - -
..........................................................TGCACCTGTCAGCAGACTGAGCCATGG....................................................................................................................................................................................................................... 27 1 2.00 2.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TGGGTGCTGTGAGACCTGTGGTGGAG.......................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................TGGATACACTCACTGAGCACTATGACA....... 27 2 1.50 1.50 1.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................GAGTATGTGAGATGGTCTGGGTGCAGGCGG............................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..................................................GTGAGCCCTGCACCTGTCAGCAGACTGA.............................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
....................................................................................................................................................................................TGTGAGATGGTCTGGGTGCAGGCGGCGA............................................................................................ 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................TGGATACACTCACTGAGCACTATGACAT...... 28 2 1.00 1.00 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TATGTGAGATGGTCTGGGTGCAGGCGG............................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................TGTCAGCAGACTGAGCCATGGGG..................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................................................................TGTTTTGGGTGCTGTGAGACCTGTtg............................................................................................................................... 26 tg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
....................................................................................................................................................................................TGTGAGATGGTCTGGGTGCAGGaggc.............................................................................................. 26 aggc 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................TGGATACACTCACTGAGCACTATGACATT..... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................TGAGCCCTGCACCTGTCAGCAGACTGAGCt........................................................................................................................................................................................................................... 30 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................GACTGTTGGAGCCCACCCTCAGGCATGGCT......................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
..............................................................................................................CAGCTTGGACTGTTGGAGCCCACCC..................................................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................TATCTTCTACAGGACTTCAACCGACAC................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
....................................................................................................................................................................................TGTGAGATGGTCTGGGTGCAGGC................................................................................................. 23 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................TGCACCTGTCAGCAGACTGAGCCATGa....................................................................................................................................................................................................................... 27 a 1.00 5.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................AGTATGTGAGATGGTCTGG......................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...............................................................................................................................................................TGTGAGACCTGTGGTGGAGTATGTGAGAT................................................................................................................ 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...AAAGAATCCTGAAGAAGGCATCAAAAACCC........................................................................................................................................................................................................................................................................... 30 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................CAGAGCCCAGACAGTGCAGCTTGGACTGTT................................................................................................................................................................................ 30 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TGTGAGATGGTCTGGGTGCAGGCGGt.............................................................................................. 26 t 1.00 11.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................CAGTGCAGCTTGGACTGTTGGAGC........................................................................................................................................................................... 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................CACTGAGCACTATGACATTCC... 21 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TGTGAGATGGTCTGGGTGCAGGCGGa.............................................................................................. 26 a 1.00 11.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................GGATACACTCACTGAGCACTATGACATTC.... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................TATCTTCTACAGGACTTCAACCGAC..................................... 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TGTGAGATGGTCTGGGTGCAGG.................................................................................................. 22 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................TGTTTTGGGTGCTGTGAGACCTGTGG............................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................TGGACTGTTGGAGCCCACCCTCAGGCA.............................................................................................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............TGAAGAAGGCATCAAAAACCCACAAACA.................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..................................................................................................................TTGGACTGTTGGAGCCCACCCTCAGGCA.............................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................TGCACCTGTCAGCAGACTGAGCCATGt....................................................................................................................................................................................................................... 27 t 1.00 5.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TGGGTGCTGTGAGACCTGTGGTG............................................................................................................................. 23 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.GGAAAGAATCCTGAAGAAGGCATCAAA................................................................................................................................................................................................................................................................................ 27 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
.GGAAAGAATCCTGAAGAAG........................................................................................................................................................................................................................................................................................ 19 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - 0.50 - - - -
..GAAAGAATCCTGAAGAAGGCATCAAAA............................................................................................................................................................................................................................................................................... 27 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - -
...................................................................................................................................................................................................................................................................CGACACCTGGATACACTCACTGAG................. 24 2 0.50 0.50 - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - -

Antisense strand
TGGAAAGAATCCTGAAGAAGGCATCAAAAACCCACAAACAGAGAGTGGAGGTGAGCCCTGCACCTGTCAGCAGACTGAGCCATGGGGGGGTAGCCAGAGCCCAGACAGTGCAGCTTGGACTGTTGGAGCCCACCCTCAGGCATGGCTTGTTTTGGGTGCTGTGAGACCTGTGGTGGAGTATGTGAGATGGTCTGGGTGCAGGCGGCGATATTGCCATCTGGTTCACACTGATGTGGTCTATCTTCTACAGGACTTCAACCGACACCTGGATACACTCACTGAGCACTATGACATTCCCAA
......................................................((((((((((((((.(((.(((..((((((((..((((.(((((((...((((((.((...)).)))))).(((((..((....))...)))))))))))).))))......))))))))..))).)))..))).....)))))))))..))..............................................................................................
.....................................................54.........................................................................................................................................................209.........................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT4()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
.....................................................................................................................................................................................................................................GATGTGGTCTATCTTCTACAGGACTTCA........................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TGATGTGGTCTATCTTCTACAGGACTTCA........................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................TACACTCACTGAGCACTATGACATTCCCA. 29 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -