| Gene: Pde4c | ID: uc009mbg.1_intron_6_0_chr8_73270136_f | SPECIES: mm9 |
|
|
|
(4) OTHER.mut |
(7) PIWI.ip |
(2) PIWI.mut |
(24) TESTES |
| GGTGCTCCTGGGAACCCCTCCGCACAGCAGTCAACAGGCAGCCCCAACAGGTATCACCCCACCCTCACCCGAAGGGCAGCTGTGAAAGTCCTCTGGTCCTAGCCTTGAGCTGTGGCTCATTGTAAACAGGCTCCACCCCCAAGCCCACATTTGCACTCAGAACCCACCCTCCACCCCCTGCCCACTTTACAGACCAGAGAAGGGTTGTGGGCATGCCTAGCGTGACACAGCCACCTCACAGGAGGCTGTGGAGCTGTGGCCCTAGGCTCCTGGGATTGAAGTGCAGAGATGAGGGTGGCACAGGCTCCCAACGGGGATCCTCGCCCTAACTCACCTGGCTCCCAGAGGACTCTGGGCTGCAGCTGGTGCAGGAGACCCTGGAGGAGCTGGACTGG .....................................................................................................................................................................................................................................................(((.(((((((.((.(((((....)))))...........(((...((((((....(((.((((....)))).)))))))))..))).)))))))))))).................................................. .....................................................................................................................................................................................................................................................246................................................................................................345................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........TGGGAACCCCTCCGCACAGCAGTCAAC........................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 22.00 | 22.00 | 8.00 | 2.00 | 6.00 | - | 2.00 | - | - | 1.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..............................................................................................................................................................................................................................................................................TGGGATTGAAGTGCAGAGATGAGGGT................................................................................................... | 26 | 1 | 16.00 | 16.00 | 6.00 | 5.00 | - | 2.00 | 1.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................TGGGATTGAAGTGCAGAGATGAGGGTG.................................................................................................. | 27 | 1 | 15.00 | 15.00 | 5.00 | 2.00 | 1.00 | 2.00 | 1.00 | - | 2.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................TCCTGGGATTGAAGTGCAGAGATGAGG..................................................................................................... | 27 | 1 | 14.00 | 14.00 | 1.00 | 4.00 | - | - | 2.00 | 2.00 | 3.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................TCCTGGGATTGAAGTGCAGAGATGAG...................................................................................................... | 26 | 1 | 11.00 | 11.00 | - | 5.00 | 1.00 | - | 1.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................TCCTGGGATTGAAGTGCAGAGATGA....................................................................................................... | 25 | 1 | 5.00 | 5.00 | - | 1.00 | - | 1.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................TAGGCTCCTGGGATTGAAGTGCAGA............................................................................................................ | 25 | 1 | 4.00 | 4.00 | - | - | - | - | - | 1.00 | 1.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................TCCGCACAGCAGTCAACAGGCAGCCCC.............................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TGGGCTGCAGCTGGTGCAGGAGACCCTGG.............. | 29 | 1 | 3.00 | 3.00 | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TGGGCTGCAGCTGGTGCAGGAGACCC................. | 26 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................CAGAGGACTCTGGGCTGCAGCTGGTG........................... | 26 | 1 | 3.00 | 3.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TGGGCTGCAGCTGGTGCAGGAGACCCTG............... | 28 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................TCCTGGGATTGAAGTGCAGAGATGAGt..................................................................................................... | 27 | t | 2.00 | 11.00 | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................CTGGGATTGAAGTGCAGAGATGAGGGT................................................................................................... | 27 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................TCCTGGGATTGAAGTGCAGAGATGAa...................................................................................................... | 26 | a | 2.00 | 5.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................TGAAGTGCAGAGATGAGGGTGGCAC.............................................................................................. | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGAAAGTCCTCTGGTCCTAGCCTTGA............................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................AGGAGACCCTGGAGGAGCTGGACTGt | 26 | t | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGAAAGTCCTCTGGTCCTAGCCTTGAGC............................................................................................................................................................................................................................................................................................. | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TGGGAACCCCTCCGCACAGCAGTCAA......................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................AGAGGACTCTGGGCTGCAGCTGGTGC.......................... | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................TCCTGGGATTGAAGTGCAGAGATGAGGGT................................................................................................... | 29 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................GAGGACTCTGGGCTGCAGCTGGTGC.......................... | 25 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................TGGTGCAGGAGACCCTGGAGGAGCTGGA.... | 28 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................TCTGGGCTGCAGCTGGTGCAGGAG..................... | 24 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................TGGGATTGAAGTGCAGAGATGAGGG.................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................GAGGACTCTGGGCTGCAGCTGGTGt.......................... | 25 | t | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................TGGGATTGAAGTGCAGAGATGAGGGTGG................................................................................................. | 28 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................CAGAGGACTCTGGGCTGCAGCTGGTa........................... | 26 | a | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................TGGTGCAGGAGACCCTGGAGGAGCT....... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGGTGCAGGAGACCCTGGAGt........... | 27 | t | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................TGGGATTGAAGTGCAGAGATGAGGGTGGC................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGGTGCAGGAGACCCTGGA............. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................CCCAGAGGACTCTGGGCTGCAGCTGGT............................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................CCTCTGGTCCTAGCCTTGAGC............................................................................................................................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................CCCACATTTGCACTCAGAACCCACCCTC................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TGGGCTGCAGCTGGTGCAGGAGAC................... | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................TCCGCACAGCAGTCAACAGGCAGCCCCAAa........................................................................................................................................................................................................................................................................................................................................................... | 30 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................TGGCTCATTGTAAACAGGCTCCACCCCC............................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TGGGAACCCCTCCGCACAGCAGTCAAag....................................................................................................................................................................................................................................................................................................................................................................... | 28 | ag | 1.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................TTGTAAACAGGCTCCACCCCCAAt............................................................................................................................................................................................................................................................ | 24 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................TGCACTCAGAACCCACCCTCCACCCCC......................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................CAGGAGACCCTGGAGGAGCTGGACTGG | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................TCAGAACCCACCCTCCACCCCCTGCCCA................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................GTGGCTCATTGTAAACAGGCTCCACCCCC............................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................TGCACTCAGAACCCACCCTCCACCCCCTa....................................................................................................................................................................................................................... | 29 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................AGGGTTGTGGGCATGCCTAGCGT............................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....CTCCTGGGAACCCCTCCGCACAGCAG............................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGGTGCAGGAGACCCTGGAG............ | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................TGTGGCTCATTGTAAACAGGCTCCACCCat............................................................................................................................................................................................................................................................... | 30 | at | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGGTGCAGGAGACCCTGGAt............ | 26 | t | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................TGAGCTGTGGCTCATTGTAAACAGGC........................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TGGGCTGCAGCTGGTGCAGGAGACCCT................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................GAAAGTCCTCTGGTCCTAGCCTTGAGCT............................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..TGCTCCTGGGAACCCCTCCGCACAGC............................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................TCCGCACAGCAGTCAACAGGCAGCCCCt............................................................................................................................................................................................................................................................................................................................................................. | 28 | t | 1.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................GGCTCCTGGGATTGAAGTGCAGAG........................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................TAGGCTCCTGGGATTGAAGTGCAGAaa.......................................................................................................... | 27 | aa | 1.00 | 4.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................CAGAGGACTCTGGGCTGCAGCTGGTGt.......................... | 27 | t | 1.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................CAGAGGACTCTGGGCTGCAGCTGGT............................ | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................TGCAGAGATGAGGGTGGCACAGGCTC........................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TGGGAACCCCTCCGCACAGCAGTC........................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....TCCTGGGAACCCCTCCGCACAGCAGTC........................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................CTAGCGTGACACAGCCACtca.............................................................................................................................................................. | 21 | tca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................CAGCAGTCAACAGGCAGCCCCAACAa......................................................................................................................................................................................................................................................................................................................................................... | 26 | a | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TGGGAACCCCTCCGCACAGCAGTCAACA....................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..TGCTCCTGGGAACCCCTCCGCACAGCAG............................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................TGGTGCAGGAGACCCTGGAGGAGCTG...... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................GAGGACTCTGGGCTGCAGCTGGTGCAGa....................... | 28 | a | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................CAGAGGACTCTGGGCTGCAGCTGGTaaat........................ | 29 | aaat | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TGAAAGTCCTCTGGTCCTAGCCTTG................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................TGAAGTGCAGAGATGAGGGTGGCACAaa........................................................................................... | 28 | aa | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................TGGTGCAGGAGACCCTGGAGGAGCTGG..... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....TCCTGGGAACCCCTCCGCACAGCAGT............................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................TGAAGTGCAGAGATGAGGGTGGCACA............................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................TAGGCTCCTGGGATTGAAGTGCAGAGAT......................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TCATTGTAAACAGGCcaag.................................................................................................................................................................................................................................................................... | 19 | caag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....TCCTGGGAACCCCTCCGCACAGCAGTCA.......................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................TCTGGGCTGCAGCTGGTGCAGGAGACC.................. | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................TAGGCTCCTGGGATTGAAGTGCAGAa........................................................................................................... | 26 | a | 1.00 | 4.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................TCTGGGCTGCAGCTGGTGCAGGAGACa.................. | 27 | a | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................TCCTGGGATTGAAGTGCAGAGATGAGGt.................................................................................................... | 28 | t | 1.00 | 14.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................TGAAGTGCAGAGATGAGGGTGGCA............................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TGGGCTGCAGCTGGTGCAGGAGcccc................. | 26 | cccc | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................TTGAAGTGCAGAGATGAGGGTGG................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................GAGGACTCTGGGCTGCAGCTGGTGCAG........................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .................................................................................................................................................CACATTTGCACTCAGAACCCACCCTCC............................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TCATTGTAAACAGGCTCCACCCCCAAGC........................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................TCCCAGAGGACTCTGGGCTGCAGCTt.............................. | 26 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................TAGGCTCCTGGGATTGAAGTGCAGAG........................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................TCCTCTGGTCCTAGCCTTGAGCTGTGGCT...................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................CACAGCAGTCAACAGGCAGCCC............................................................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................CTCCTGGGATTGAAGTGCAGAGATGA....................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GGTGCTCCTGGGAACCCCTCCGCACAGCAGTCAACAGGCAGCCCCAACAGGTATCACCCCACCCTCACCCGAAGGGCAGCTGTGAAAGTCCTCTGGTCCTAGCCTTGAGCTGTGGCTCATTGTAAACAGGCTCCACCCCCAAGCCCACATTTGCACTCAGAACCCACCCTCCACCCCCTGCCCACTTTACAGACCAGAGAAGGGTTGTGGGCATGCCTAGCGTGACACAGCCACCTCACAGGAGGCTGTGGAGCTGTGGCCCTAGGCTCCTGGGATTGAAGTGCAGAGATGAGGGTGGCACAGGCTCCCAACGGGGATCCTCGCCCTAACTCACCTGGCTCCCAGAGGACTCTGGGCTGCAGCTGGTGCAGGAGACCCTGGAGGAGCTGGACTGG .....................................................................................................................................................................................................................................................(((.(((((((.((.(((((....)))))...........(((...((((((....(((.((((....)))).)))))))))..))).)))))))))))).................................................. .....................................................................................................................................................................................................................................................246................................................................................................345................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM475281(GSM475281) total RNA. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................GAAAGTCCTCTGGTCCTAGCCTTGA............................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........GAACCCCTCCGCACAaaa................................................................................................................................................................................................................................................................................................................................................................................. | 18 | aaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |