(5)
OTHER.mut
(5)
PIWI.ip
(1)
PIWI.mut
(29)
TESTES

Sense strand
AGGCCATCCCAATCCTGAGGGCTGCCCTGAAGCTGGAACCTTCCAACAAGGTAAGCAGAACTCGGCTGGGCAGGGCTGGGCTGGGCTGGGCTGGGCTGGCAAGTCCCTGTAGTTGTCTGCTTCTAGTCATTATTGCAGTTCCATCTTCTGACTTGCCTACGGGTGAGACAGCAGCTCCCGCTTTGTTAGAGCTGATGGGAATAGGTAGAACCACTGAGTCTCAGGAGCCCCAACACTTGACAGACCTTGGGACCTACGAGAAGAAGGGAGCAGTAATGATGACAGGCAAGTCAGCTGCCTCCTGCACGTGCTCACCCACTCCTACCCACCTCCCACAGACGATCCACGCAGAGCTCTCAAAGCTGGTAAAGAAGCGTGCTGCACAGCG
....................................................(((((((...(((((..((((((((..(((((.((.....)).))))).)).))))))))))))))))))...............(((((.....(((.((..((....))..)).)))((((((..((...))..))))))..((((...(((......)))...)))).)))))................................................................................................................................................................
...................................................52..................................................................................................................................................................................232..........................................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
..................................................GTAAGCAGAACTCGGCTGGGCAGGGC........................................................................................................................................................................................................................................................................................................................ 26 1 13.00 13.00 - 13.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................TCAAAGCTGGTAAAGAAGCGTGCTGC...... 26 1 6.00 6.00 - - 1.00 1.00 - - - - 1.00 1.00 - - - - - - - 1.00 - - 1.00 - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................GCAGAGCTCTCAAAGCTGGTAAAGAAGCGTGCT........ 33 1 4.00 4.00 - - - - - - 4.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TAGGTAGAACCACTGAGTCTCAGGAGC................................................................................................................................................................ 27 1 4.00 4.00 3.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................TGACAGACCTTGGGACCTACGAGAAG............................................................................................................................. 26 1 4.00 4.00 3.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TAGGTAGAACCACTGAGTCTCAGGAG................................................................................................................................................................. 26 1 4.00 4.00 3.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................TGAAGCTGGAACCTTCCAACAAGacg............................................................................................................................................................................................................................................................................................................................................... 26 acg 3.00 0.00 - - - 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................TGACAGACCTTGGGACCTACGAGAAGAAGG......................................................................................................................... 30 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................TCAAAGCTGGTAAAGAAGCGTGCTGCAC.... 28 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................TGAAGCTGGAACCTTCCAACAAGacga.............................................................................................................................................................................................................................................................................................................................................. 27 acga 2.00 0.00 - - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............TGAGGGCTGCCCTGAAGCTGGAACCTTCC........................................................................................................................................................................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
......................................................................................................................................................................................................................................................TTGGGACCTACGAGAAGAAGGGAGC..................................................................................................................... 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............TGAGGGCTGCCCTGAAGCTGGAACC............................................................................................................................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................AGCTGGTAAAGAAGCGTGCTGCACAG.. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................CAAAGCTGGTAAAGAAGCGTGCTGCA..... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
........................................................................................................................................................................................................................................................................................................................................................CACGCAGAGCTCTCAAAGCTGGTAAAG................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.........................................................................................................................................................................................TTAGAGCTGATGGGAATAGGTAGAACC................................................................................................................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................TACCCACCTCCCACAGACGATCCACGC....................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................GCAGAGCTCTCAAAGCTGGTA.................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................GACGATCCACGCAGAGCTCTCAAAGCTG....................... 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
........................................................AGAACTCGGCTGGGactg.......................................................................................................................................................................................................................................................................................................................... 18 actg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...............TGAGGGCTGCCCTGAAGCTGGAAC............................................................................................................................................................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.............................................................................................................................................................................................................................................TGACAGACCTTGGGACCTACGAGAA.............................................................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TAGAGCTGATGGGAATAGGTAGAACCAC.............................................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................GAGGGCTGCCCTGAAGCTGGAA.............................................................................................................................................................................................................................................................................................................................................................. 22 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................GAGCTCTCAAAGCTGGTAAAGAAGCGT........... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................TGATGGGAATAGGTAGAACCACTGAGT......................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................CTGCCCTGAAGCTGGAACCTTCCAACAA................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................GAGCTGATGGGAATAGGTAGAACCAC.............................................................................................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................TCTCAAAGCTGGTAAAGAAGCGTGCTG....... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..........................................................................................................................................................................................TAGAGCTGATGGGAATAGGTAGAAC................................................................................................................................................................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................CAAAGCTGGTAAAGAAGCGTGCTGCACA... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................AGCAGAACTCGGCTGGGCAGGGCTGt..................................................................................................................................................................................................................................................................................................................... 26 t 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.............CCTGAGGGCTGCCCTGAAGCTGGAACCT........................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................TCAAAGCTGGTAAAGAAGC............. 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...........................................................................................................TGTAGTTGTCTGCTTCTAGTCATTATT.............................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...................................................................................................................................................................................................TGGGAATAGGTAGAACCACTGAGTCTC...................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................TCTCAAAGCTGGTAAAGAAGCGTGCT........ 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TAGAGCTGATGGGAATAGGTAGAACC................................................................................................................................................................................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................CAAAGCTGGTAAAGAAGCGTG.......... 21 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................TTTGTTAGAGCTGATGGGAATAGGTAt.................................................................................................................................................................................... 27 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TGTTAGAGCTGATGGGAATAGGTAG.................................................................................................................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................ACGATCCACGCAGAGCTCTCAAAG.......................... 24 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.........................................TCCAACAAGGTAAGCAGAACTCGGCT................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............TCCTGAGGGCTGCCCTGAAGCTGGAAC............................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................GACGATCCACGCAGAGCTCTCAAAGC......................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................CACGCAGAGCTCTCAAAGCTGGTA.................... 24 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................CAGAGCTCTCAAAGCTGGTAAAGAAGCGTGCTGC...... 34 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
......................................................................................................................................................................................................................................................................GAAGGGAGCAGTAATGATGACAGGCA.................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................CGATCCACGCAGAGCTCTCAAAGCTGGT..................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.............................................................................................................................................................................................................................................................................................................................................................AGAGCTCTCAAAGCTGGTAAAGAAGCG............ 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................CTGCCCTGAAGCTGGA............................................................................................................................................................................................................................................................................................................................................................... 16 7 0.57 0.57 - - - - - - - 0.57 - - - - - - - - - - - - - - - - - - - - -

Antisense strand
AGGCCATCCCAATCCTGAGGGCTGCCCTGAAGCTGGAACCTTCCAACAAGGTAAGCAGAACTCGGCTGGGCAGGGCTGGGCTGGGCTGGGCTGGGCTGGCAAGTCCCTGTAGTTGTCTGCTTCTAGTCATTATTGCAGTTCCATCTTCTGACTTGCCTACGGGTGAGACAGCAGCTCCCGCTTTGTTAGAGCTGATGGGAATAGGTAGAACCACTGAGTCTCAGGAGCCCCAACACTTGACAGACCTTGGGACCTACGAGAAGAAGGGAGCAGTAATGATGACAGGCAAGTCAGCTGCCTCCTGCACGTGCTCACCCACTCCTACCCACCTCCCACAGACGATCCACGCAGAGCTCTCAAAGCTGGTAAAGAAGCGTGCTGCACAGCG
....................................................(((((((...(((((..((((((((..(((((.((.....)).))))).)).))))))))))))))))))...............(((((.....(((.((..((....))..)).)))((((((..((...))..))))))..((((...(((......)))...)))).)))))................................................................................................................................................................
...................................................52..................................................................................................................................................................................232..........................................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
mjTestesWT1()
Testes Data. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
........................................................................................................................................................................................GAGCTGATGGGAATcggt.......................................................................................................................................................................................... 18 cggt 3.00 0.00 - - - - - - - - - - - 1.00 - 2.00 - - - - - - - - - - - - - - -
....................GCTGCCCTGAAGCTGGAACCTTCCAACA.................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................GAGCTGATGGGAATAcggt......................................................................................................................................................................................... 19 cggt 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
....................................................................................................AAGTCCCTGTAGTTGTCTGCTTCTAGTCA................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................AGTCATTATTGCAGTTCCATCTTCTG.............................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................GTCTGCTTCTAGTCAT.................................................................................................................................................................................................................................................................. 16 5 0.20 0.20 - - 0.20 - - - - - - - - - - - - - - - - - - - - - - - - - -