(7)
OTHER.mut
(8)
PIWI.ip
(3)
PIWI.mut
(29)
TESTES

Sense strand
ATTCAGCAGCTTCAGAATGAACGCGCACAGGCCTTCCGCCGTCTAGACCAGTGAGCGGGCTGGGCTGGAGGAGGGGGCGGGCCCTGGGAGAGCTTGCCTGAGGGGGACCTGAGGGGAGGCGGCTGGAGGCGTGGCTGGGAGGACCTAGGTTGTGGACTTGGTCGGAAGAGGTGGGGAGAGAGCCAGATCTGGTCCAGGAGATGCAGGAGTGCTGCTGCCGGGAGCAGGGCGTACTTGAAAGCGAAGTCTA
............................................................................................................................................(((((.(((((.(((.(((..((............))..)))))))))))))))).......................................................
............................................................................................................................................141................................................................208........................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
.................................................................................................................................................TAGGTTGTGGACTTGGTCGGAAGAGG............................................................................... 26 1 5.00 5.00 - 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..................................................................................................................................................AGGTTGTGGACTTGGTCGGAAGAGGTG............................................................................. 27 1 3.00 3.00 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................TGAACGCGCACAGGCCTTCCGCCGTC............................................................................................................................................................................................................... 26 1 3.00 3.00 - - - - 2.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..................................................................................................................................................AGGTTGTGGACTTGGTCGGAAGAGG............................................................................... 25 1 3.00 3.00 - - - - - 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - -
............CAGAATGAACGCGCACAGGCCTTCCGCCGT................................................................................................................................................................................................................ 30 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................AGGTTGTGGACTTGGTCGGAAGAGGT.............................................................................. 26 1 2.00 2.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TAGGTTGTGGACTTGGTCGGAAGAGGT.............................................................................. 27 1 2.00 2.00 - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.TTCAGCAGCTTCAGAATGAACGCGCAC.............................................................................................................................................................................................................................. 27 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
............CAGAATGAACGCGCACAGGCCTTCCGCC.................................................................................................................................................................................................................. 28 1 2.00 2.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................AGGAGATGCAGGAGTGgag.................................... 19 gag 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...................................................................................................................................................GGTTGTGGACTTGGgctt..................................................................................... 18 gctt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.......................................................................................................................................................................................................................TGCCGGGAGCAGGGCGTACTTGAAAGC........ 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TTGGTCGGAAGAGGTGGGGAGAGAGC................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TAGGTTGTGGACTTGGTCGGAAGAGGTt............................................................................. 28 t 1.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........TCAGAATGAACGCGCACAGGCCTTCCGC................................................................................................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................ACCTAGGTTGTGGACTTGGTCGGAA................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TCTGGTCCAGGAGATGCAGGAGTGCT..................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................CGCACAGGCCTTCCGCCGTCTAGACC......................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..................................................................................................................................................................................................................................GGGCGTACTTGAAAGCGAAGTCTAgata 28 gata 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................GGGCGGGCCCTGGGAGAGCTTGCag....................................................................................................................................................... 25 ag 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.................TGAACGCGCACAGGC.......................................................................................................................................................................................................................... 15 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................................................................................................................GGAGTGCTGCTGCCGGGAGCAGGGCG................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..........TTCAGAATGAACGCGCACAGGCCTTCC..................................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TGCCGGGAGCAGGGCGTACTTGAAA.......... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TCTGGTCCAGGAGATGCg............................................. 18 g 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................................................................................................................................................................................................................TGCTGCCGGGAGCAGGGCGTACTTGA............ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................AGATCTGGTCCAGGAGATGCAGGAGT........................................ 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............CAGAATGAACGCGCACAGGCCTTCCGCCG................................................................................................................................................................................................................. 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGCTGCCGGGAGCAGGGCGTACTTGAA........... 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TAGGTTGTGGACTTGGTCGGAAGAGa............................................................................... 26 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...CAGCAGCTTCAGAATGAACGCGCACA............................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................................GAGAGCCAGATCTGGTCCAGGAGATGC.............................................. 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TGGTCCAGGAGATGCAGGAGTGCTGC................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...............................................................................................................................................................GGTCGGAAGAGGTGGGGAGA....................................................................... 20 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......AGCTTCAGAATGAACGCGCACAGGCCTTC...................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................GACCTAGGTTGTGGACTTGGTCGGA.................................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................GAGAGCCAGATCTGGTCCAGGAGATG............................................... 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.................TGAACGCGCACAGGCCTTCCGCCGT................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................TGGAGGCGTGGCTGaatc............................................................................................................. 18 aatc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...........................................................................................................................................................................................TCTGGTCCAGGAGATGCAGGAGTGC...................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.................................................................................................................................CGTGGCTGGGAGGACCTAGGT.................................................................................................... 21 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............AGAATGAACGCGCACAGGCCTTCCGCCGT................................................................................................................................................................................................................ 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............GAATGAACGCGCACAGGCCTTCCGCC.................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
...........................................................................................................................................................ACTTGGTCGGAAGAGGTGGG........................................................................... 20 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................TGAACGCGCACAGGCCTTCCGCCGTCT.............................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...........TCAGAATGAACGCGCACAGGCCTTCCGCC.................................................................................................................................................................................................................. 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................CGCACAGGCCTTCCGCCGTCTAGAC.......................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......CAGCTTCAGAATGAACGCGCACAGGCC......................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..............GAATGAACGCGCACAGGCCTTCCGCCG................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................................................................................................AGATCTGGTCCAGGAGATGCAGGAa......................................... 25 a 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................CCAGGAGATGCAGGAGTGCTGCT.................................. 23 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -

Antisense strand
ATTCAGCAGCTTCAGAATGAACGCGCACAGGCCTTCCGCCGTCTAGACCAGTGAGCGGGCTGGGCTGGAGGAGGGGGCGGGCCCTGGGAGAGCTTGCCTGAGGGGGACCTGAGGGGAGGCGGCTGGAGGCGTGGCTGGGAGGACCTAGGTTGTGGACTTGGTCGGAAGAGGTGGGGAGAGAGCCAGATCTGGTCCAGGAGATGCAGGAGTGCTGCTGCCGGGAGCAGGGCGTACTTGAAAGCGAAGTCTA
............................................................................................................................................(((((.(((((.(((.(((..((............))..)))))))))))))))).......................................................
............................................................................................................................................141................................................................208........................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR051941(GSM545785)
18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
........................GCACAGGCCTTCCGCCGTCTAGACCA........................................................................................................................................................................................................ 26 1 3.00 3.00 - 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................ACAGGCCTTCCGCCGTCTAGACCA........................................................................................................................................................................................................ 24 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
TTCAGCAGCTTCAGAATg........................................................................................................................................................................................................................................ 18 g 2.00 0.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
................ATGAACGCGCACAGGCCTTCCG.................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................GGCTGGGAGGACCTAGGTTGTGGACTT........................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................CTAGACCAGTGAGCtggt.................................................................................................................................................................................................. 18 tggt 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................AGAGCCAGATCTGGTCCAGGAGATGCA............................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................CACAGGCCTTCCGCCGTCTAGACt.......................................................................................................................................................................................................... 24 t 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................GGGGAGAGAGCCAGATCTGGTCCAGGA................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................AACGCGCACAGGCCTTCCGCCGTCTA............................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................GGTGGGGAGAGAGCCAGATCTGGTCCA...................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................CTTCCGCCGTCTAGACCAGTGAG................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...............................................................................................................................................................................GAGAGAGCCAGATCTGGTCCAGGA................................................... 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -