(5)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(2)
PIWI.mut
(21)
TESTES

Sense strand
CAGCTGTGGTGTGACCCTCCACAAGATCCCTCATTTCTCTGAGTGCAGAGATGGTTAAGCACTAGCTCTGTCCTGACAGACCCAGTCTGTGGAGTTCGGGTTTGTCTCTTTCGAGTCGGGGGTATCTTCCACGTAGCTGGAGCAGGGAGCGTGGTCTGCTTGTCAGCGTGTCGATTCAGCATCCTCCCGGTCCACTGCAGAGCTCACCGTCAGTACCTGCTCAGTGGTCAGCACTATGACTTCCCGAGTT
................................................................((((......(((((((((...((....))...)))))))))......))))......................................................................................................................................
..................................................51.................................................................118..................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
...................................................TGGTTAAGCACTAGCTCTGTCCTGACA............................................................................................................................................................................ 27 1 3.00 3.00 - - - - 1.00 - 1.00 - - 1.00 - - - - - - - - - - - -
...................................................TGGTTAAGCACTAGCTCTGTCCTGAC............................................................................................................................................................................. 26 1 3.00 3.00 - - - - 1.00 - 1.00 - - 1.00 - - - - - - - - - - - -
.........................................................................................TGGAGTTCGGGTTTGTCTCTTTCGAG....................................................................................................................................... 26 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - -
.........................................................................TGACAGACCCAGTCTGTGGAGTTCGG....................................................................................................................................................... 26 1 2.00 2.00 - - - 1.00 1.00 - - - - - - - - - - - - - - - - -
..................................................................................................................GTCGGGGGTATCagt......................................................................................................................... 15 agt 2.00 0.00 - - - 2.00 - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................TCCACTGCAGAGCTCACCGTCAGTACCT................................ 28 1 2.00 2.00 - - - 1.00 - - - - 1.00 - - - - - - - - - - - - -
............................................................................................................................TCTTCCACGTAGCTGGAGCAGGGAGC.................................................................................................... 26 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - -
..................................................................................................................................................................TCAGCGTGTCGATTCAGCATCCTCCC.............................................................. 26 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - -
...............................................................................................................................................................TTGTCAGCGTGTCGATTCAGCATCCTC................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - -
...........................................................................................................................................................................CGATTCAGCATCCTCCCGGTCCACTGCAt.................................................. 29 t 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
..........................................................................................................................................................TCTGCTTGTCAGCGTGTCGATTCAGCA..................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................TCCACTGCAGAGCTCACCGTCAGTACCTGt.............................. 30 t 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - -
..................................................................................................................................................................................................................CAGTACCTGCTCAGTGGTCAGCACTATGACT......... 31 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCTTCCACGTAGCTGGAGCAGGGAGCGT.................................................................................................. 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - -
.................................................................................................................................................................................AGCATCCTCCCGGTCCACTGCAGAGCTC............................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................GATGGTTAAGCACTAGC........................................................................................................................................................................................ 17 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................CATTTCTCTGAGTGCAGgc........................................................................................................................................................................................................ 19 gc 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - -
...............................................................................................................................................................TTGTCAGCGTGTCGATTCAGCATCCTCCC.............................................................. 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - -
..................................................ATGGTTAAGCACTctgg....................................................................................................................................................................................... 17 ctgg 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................................................................TTTCGAGTCGGGGGTATCTTCCACGT.................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 -
........................................................................................................TCTCTTTCGAGTCGGGGGTATCTTC......................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - -
............................................................................................................................................................TGCTTGTCAGCGTGTCGATTCAGCATC................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
...............................................................................................................................................................TTGTCAGCGTGTCGATTCAGCATCCT................................................................. 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
................................ATTTCTCTGAGTGCAGAGATGGTTAAGC.............................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - -
.........................................................................TGACAGACCCAGTCTGTGGAGTTCGGG...................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................................................CTTTCGAGTCGGGGGTATCTTCCACG..................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TTCCACGTAGCTGGAGCAGGGAGCGT.................................................................................................. 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - -
..............................................................................................................................................................................................TCCACTGCAGAGCTCACCGTCAGTACC................................. 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................TAGCTCTGTCCTGACAGACCCAGcct.................................................................................................................................................................. 26 cct 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - -
............................................................................................AGTTCGGGTTTGTCTCTTTCGAGTCGG................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TGTCAGCGTGTCGATTCAGCATCCT................................................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
.................TCCACAAGATCCCTCATTTCTCTGAGT.............................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - -
................................................................................................................................................................TGTCAGCGTGTCGATTCAGCATCatc................................................................ 26 atc 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - -
...........................................................................................................................................................................................................TCACCGTCAGTACCTGCTCAGTGGTCA.................... 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - -
............................................................................................................................................................TGCTTGTCAGCGTGTCGATTCAGCAT.................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................CATCCTCCCGGTCCACTGCAGtag............................................... 24 tag 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................TCTGCTTGTCAGCGTGTCGATTCAGCAT.................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TCACCGTCAGTACCTGCTCAGTGGTCAGCAC................ 31 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................................................TGTGGAGTTCGGGTTTGTCTCTTTC.......................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - -

Antisense strand
CAGCTGTGGTGTGACCCTCCACAAGATCCCTCATTTCTCTGAGTGCAGAGATGGTTAAGCACTAGCTCTGTCCTGACAGACCCAGTCTGTGGAGTTCGGGTTTGTCTCTTTCGAGTCGGGGGTATCTTCCACGTAGCTGGAGCAGGGAGCGTGGTCTGCTTGTCAGCGTGTCGATTCAGCATCCTCCCGGTCCACTGCAGAGCTCACCGTCAGTACCTGCTCAGTGGTCAGCACTATGACTTCCCGAGTT
................................................................((((......(((((((((...((....))...)))))))))......))))......................................................................................................................................
..................................................51.................................................................118..................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
........................................................................................................................................................GGTCTGCTTGTCAGCGTGTCGATTCA........................................................................ 26 1 12.00 12.00 8.00 4.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................GTGGTCTGCTTGTCAGCGTGTCGATTCA........................................................................ 28 1 9.00 9.00 4.00 5.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................GGTCTGCTTGTCAGCGTGTCGATTCAGCA..................................................................... 29 1 7.00 7.00 2.00 5.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................CAGAGCTCACCGTCAGTACCTGCTCA........................... 26 1 5.00 5.00 2.00 2.00 - - - - - 1.00 - - - - - - - - - - - - - -
.................TCCACAAGATCCCTCATTTCTCTGA................................................................................................................................................................................................................ 25 1 4.00 4.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................TGGTCTGCTTGTCAGCGTGTCGATTCA........................................................................ 27 1 4.00 4.00 1.00 1.00 - - - - 1.00 - - - - - - - - - - 1.00 - - - -
.................................................GATGGTTAAGCACTAGCTCTGTCCTGACA............................................................................................................................................................................ 29 1 3.00 3.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................GTCTGCTTGTCAGCGTGTCGATTCA........................................................................ 25 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................GTCCACTGCAGAGCTCACCGTCA...................................... 23 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................TCTGCTTGTCAGCGTGTCGATTCAGCA..................................................................... 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................GGTCCACTGCAGAGCTCACCGTCAGTA................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................CTGCTTGTCAGCGTGTCGATTCAGCA..................................................................... 26 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TGCAGAGCTCACCGTCAGTACCTGa............................... 25 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................GTCAGCGTGTCGATTCA........................................................................ 17 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.............ACCCTCCACAAGATCCCTCATTTC..................................................................................................................................................................................................................... 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................CCGTCAGTACCTGCTCAGTGGTCAGCAC................ 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................CCACTGCAGAGCTCACCG......................................... 18 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGCAGAGCTCACCGTCAGTACCTGC.............................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................CTGCTTGTCAGCGTGTCGATTCAGCAT.................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................GTCCACTGCAGAGCTCACCGTCAGT.................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TCCACTGCAGAGCTCACCGTCAGTAa................................... 26 a 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................AGAGATGGTTAAGCACTAGCTCTGTC.................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - -
.........................................................................................................................................................................................CCCGGTCCACTGCAGAGCTCACCGTCA...................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................CTGCAGAGCTCACCGTCAGTACCTG............................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................GCAGAGCTCACCGTCAGTACCTGCTC............................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................ATTCAGCATCCTCCCGGTCCACTGCA................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................TCCCGGTCCACTGCAcac................................................... 18 cac 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00
.............ACCCTCCACAAGATCCCTCATTT...................................................................................................................................................................................................................... 23 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................CCTCCCGGTCCACTGCAGAGCTCAC........................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................GTCCACTGCAGAGCTCACCGTCAGTA................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
...............CTCCACAAGATCCCTCATTTCTCTGAt................................................................................................................................................................................................................ 27 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................CCGGTCCACTGCAGAGCTCACCGTCAGTA................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................AGTACCTGCTCAGTGGTCAGCACTA.............. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................TCCACTGCAGAGCTCACCGTCA...................................... 22 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
....................................................................................................................CGGGGGTATCTTCCACGTAGCTGGA............................................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................GGTCCACTGCAGAGCTCACCGTCA...................................... 24 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................CTCCCGGTCCACTGCAGAGCTCACCGT........................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................ACTGCAGAGCTCACCGTCAGTACC................................. 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................................................................................................................................................ACCGTCAGTACCTGCTCAGTGGTCAGCA................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................GCAGAGCTCACCGTCAGTACCTGCT............................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................GCGTGGTCTGCTTGTCAGCGTGTCGATTCA........................................................................ 30 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................TCGATTCAGCATCCTCCCGGTCCA........................................................ 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.............ACCCTCCACAAGATCCCTCATTTCT.................................................................................................................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................GCTTGTCAGCGTGTCGATTCAGCAcg..................................................................... 26 cg 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
.................................................GATGGTTAAGCACTAGCTCTGTCCTG............................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................TCCACTGCAGAGCTCA............................................ 16 5 0.20 0.20 0.20 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................CCACTGCAGAGCTCA............................................ 15 14 0.07 0.07 - - - - - - - 0.07 - - - - - - - - - - - - - -