| Gene: Crlf1 | ID: uc009maj.1_intron_3_0_chr8_73023399_f.3p | SPECIES: mm9 |
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(4) PIWI.ip |
(2) PIWI.mut |
(15) TESTES |
| CACTGTTGCCAGCATTTAATGCCAGCATTTAATGCCAGCATTTAATGCCAGCATTAGGGGAGGCAGAGGCAGAAGGATCTCTCTGAGTTCAAGGCCATCCTGAATCTACATAAAGAGCTCCAGGCCAGCCAGGGCTGCGCAGTAAAACCTTGTCTCAAAAAACAAAGCATCTCTAGTGACCAGGCTTGCTCCACCCCCAGTGACCACGGACCCCCCACCCGACGTGCACGTGAGCCGCGTTGGGGGCCTG ..................................................................................................................((((.....((((((....)))).)).......(((.(((.......................))).)))...))))........................................................... ...............................................................................................96...............................................................................................193....................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................TGAATCTACATAAAGAGCTCCAGGCCAGC......................................................................................................................... | 29 | 1 | 17.00 | 17.00 | 11.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | 2.00 | - | - | - | - |
| ..........................................................................................................TACATAAAGAGCTCCAGGCCAGCCAGGGC................................................................................................................... | 29 | 1 | 4.00 | 4.00 | 2.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .................................................................................TCTGAGTTCAAGGCCATCCTGAAT................................................................................................................................................. | 24 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................CAAAGCATCTCTAGTGACCAGGCTTGC............................................................. | 27 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................TCTGAGTTCAAGGCCATCCTGAATC................................................................................................................................................ | 25 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................TCTCTAGTGACCAGGCTTGCTCCACCCC..................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..............................................................................................................TAAAGAGCTCCAGGCCAGCCAGGa.................................................................................................................... | 24 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................AATCTACATAAAGAGCTCCAGGCCAGC......................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................AACAAAGCATCTCTAGTGACCAGGCT................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................TAATGCCAGCATTAGGGGAGGaaga....................................................................................................................................................................................... | 25 | aaga | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................TGCACGTGAGCCGCGTTGGGGGCCTG | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ........................................................................................................TCTACATAAAGAGCTCCAGGCCAGCCAGaa.................................................................................................................... | 30 | aa | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................AAAAACAAAGCATCTCTAGTGACCAGG.................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................AAAAACAAAGCATCTCTAGTGACCAGGC................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TGTCTCAAAAAACAAAGCATCTCTAGTG........................................................................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................TCTGAGTTCAAGGCCATCCTGAATCTA.............................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................ACATAAAGAGCTCCAGGCCAGCCAGGGC................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................CTGAATCTACATAAAGAGCTCCAGGC............................................................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................CGTGCACGTGAGCCGCGTTGGGGGCC.. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................GAATCTACATAAAGAGCTCCAGGCCAGC......................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TCTCAAAAAACAAAGCATCTCTAGTGACC..................................................................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................TCTGAGTTCAAGGCCATggtc.................................................................................................................................................... | 21 | ggtc | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................AGGATCTCTCTGAGTTCAAGGCCATaa...................................................................................................................................................... | 27 | aa | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................TTTAATGCCAGCATTAGGGGAGGCAGA....................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TGTCTCAAAAAACAAAGCATCTCTAGTGA....................................................................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................AGGATCTCTCTGAGTTCAAGGCCATC....................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................CCTGAATCTACATAAAGAGCTCCAGGC............................................................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................AAGGCCATCCTGAATCTACATAAAGAGC.................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................TACATAAAGAGCTCCAGGCCAGCCAGt..................................................................................................................... | 27 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..........................................................................................................TACATAAAGAGCTCCAGGCCAGCCAGG..................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TCTCAAAAAACAAAGCATCTCTAGT......................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................AAAACAAAGCATCgcg............................................................................ | 16 | gcg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ......................................................................................................................................................TGTCTCAAAAAACAAAGCATCTCTAGT......................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................TAAAGAGCTCCAGGCCAGCCAGGG.................................................................................................................... | 24 | 3 | 0.67 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................TAAAGAGCTCCAGGCCAGCCAGGGCTGC................................................................................................................ | 28 | 2 | 0.50 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................ATCTCTCTGAGTTCAAGGCCATCCTG.................................................................................................................................................... | 26 | 3 | 0.33 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................AGAAGGATCTCTCTGAGTTCAAGGCC.......................................................................................................................................................... | 26 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - |
| ..............................................................................................................TAAAGAGCTCCAGGCCAGCCAGGGC................................................................................................................... | 25 | 3 | 0.33 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CACTGTTGCCAGCATTTAATGCCAGCATTTAATGCCAGCATTTAATGCCAGCATTAGGGGAGGCAGAGGCAGAAGGATCTCTCTGAGTTCAAGGCCATCCTGAATCTACATAAAGAGCTCCAGGCCAGCCAGGGCTGCGCAGTAAAACCTTGTCTCAAAAAACAAAGCATCTCTAGTGACCAGGCTTGCTCCACCCCCAGTGACCACGGACCCCCCACCCGACGTGCACGTGAGCCGCGTTGGGGGCCTG ..................................................................................................................((((.....((((((....)))).)).......(((.(((.......................))).)))...))))........................................................... ...............................................................................................96...............................................................................................193....................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................ATCCTGAATCTACATAAAGAGCTCCA................................................................................................................................ | 26 | 1 | 17.00 | 17.00 | - | - | 6.00 | 2.00 | 5.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - |
| ...............................................................................................CATCCTGAATCTACATAAAGAGCTCCA................................................................................................................................ | 27 | 1 | 6.00 | 6.00 | 1.00 | - | 4.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................GAGTTCAAGGCCATCCTGAATCTACA............................................................................................................................................ | 26 | 1 | 3.00 | 3.00 | - | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .............................................................................................GCCATCCTGAATCTACATAAAGAGCTCCA................................................................................................................................ | 29 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................TCCTGAATCTACATAAAGAGCTCCAG............................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................CATCCTGAATCTACATAAAGAGCTCCAt................................................................................................................................ | 28 | t | 2.00 | 0.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................TGAGCCGCGTTaacc......... | 15 | aacc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...........................................................................................AGGCCATCCTGAATCTACATAAAGA...................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................GATCTCTCTGAGTTCAAGGCCATCCTGA................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................AGGCCATCCTGAATCTACATAAAGAGCTCC................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ....................................................................................GAGTTCAAGGCCATCCTGAATCTACATA.......................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................GCCATCCTGAATCTACATAAAGAGCTC.................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................GCCATCCTGAATCTACATAAAGAGCTCCAG............................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ............................................................................................GGCCATCCTGAATCTACATAAAGAGCTCCA................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................GGCCATCCTGAATCTACATAAAGAGCT................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................AGTTCAAGGCCATCCTGAATCTACATA.......................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................GGCAGAAGGATCTCTCTGAGTTCAata............................................................................................................................................................... | 27 | ata | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................TTCAAGGCCATCCTGAATCTACATA.......................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........................................................................................CAAGGCCATCCTGAATCTACATAAAGA...................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................GGCCATCCTGAATCTACATAAAGA...................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..........................................................................................AAGGCCATCCTGAATCTACATAAAGA...................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................CCATCCTGAATCTACATAAAGAGCTCCA................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....................................................................CAGAAGGATCTCTCTGAGTTCAAG............................................................................................................................................................. | 24 | 3 | 0.67 | 0.67 | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................GCAGAAGGATCTCTCTGAGTTCA............................................................................................................................................................... | 23 | 4 | 0.50 | 0.50 | - | 0.25 | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - |
| .....................................................................CAGAAGGATCTCTCTGAGTTCA............................................................................................................................................................... | 22 | 5 | 0.20 | 0.20 | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - |