(6)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(29)
TESTES

Sense strand
ATGGCCTGACCACAGTAGCCTTGAAAGACACCAGCACTGAGGCGCTCTTGGTGAGCCTTGGCAGAGCCTGGAAGCCCCACCACCCCACCTTGCAGAGCTTCTGCTGAGGCTTTCCCCAATTTTGTGCTTTTGCTCTCCTAGAAAAGCAGCCCAGAAGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGGA
....................................................((((((..((((((((((.(((..............))).))).))).))))..))))))...............................................................................
..................................................51............................................................113............................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
.........................................................................................................................................................GAAGAACGAGAGCGGATGATCAAGCA............ 26 1 12.00 12.00 4.00 - 1.00 - - 2.00 2.00 - 2.00 - - - - - 1.00 - - - - - - - - - - - - - - -
.........................................................................................TTGCAGAGCTTCTGCTGAGG.................................................................................. 20 1 9.00 9.00 - - - - - - - - - 3.00 - 3.00 - - - - - 1.00 - - - - 1.00 - 1.00 - - - - -
..................................................GTGAGCCTTGGCAGAGCCTGGAAGC.................................................................................................................... 25 1 8.00 8.00 - - 1.00 - - - - - - - 4.00 - - - - 1.00 - 1.00 - - - 1.00 - - - - - - - -
..........................................................................................TGCAGAGCTTCTGCTGAGGa................................................................................. 20 a 8.00 0.00 - - - - - - - 6.00 - - - - - - - - - - - 2.00 - - - - - - - - - -
...................................................TGAGCCTTGGCAGAGCCTGGAAGCCCCACC.............................................................................................................. 30 1 8.00 8.00 3.00 4.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................AGAAGAACGAGAGCGGATGATCAAGC............. 26 1 6.00 6.00 1.00 2.00 - - 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGCCTTGGCAGAGCCTGGAAGCCCC................................................................................................................. 28 1 5.00 5.00 2.00 2.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................................................................AGAAGAACGAGAGCGGATGATCAAGCA............ 27 1 4.00 4.00 1.00 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGCCTTGGCAGAGCCTGGAAGCCC.................................................................................................................. 27 1 4.00 4.00 - 1.00 - - - - - - - - - - - 1.00 - 1.00 - - - - 1.00 - - - - - - - - -
...................................................TGAGCCTTGGCAGAGCCTGGAAGCCC.................................................................................................................. 26 1 4.00 4.00 1.00 - - - 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................................AAGAACGAGAGCGGATGATCAAGCA............ 25 1 4.00 4.00 1.00 - - - 1.00 - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - -
............................................................................................................................................................GAACGAGAGCGGATGATCAAGCAGC.......... 25 1 3.00 3.00 - - - - - 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGCCTTGGCAGAGCCTGGAAGCCCCA................................................................................................................ 29 1 3.00 3.00 2.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....................TTGAAAGACACCAGCACTGAGGCGCTCTTG............................................................................................................................................. 30 1 3.00 3.00 - - - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................GAAGAACGAGAGCGGATGATCAAGCAG........... 27 1 2.00 2.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................TGCAGAGCTTCTGCTGAGGCaa............................................................................... 22 aa 2.00 0.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............CAGTAGCCTTGAAAGACACCAGCACTG........................................................................................................................................................ 27 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................TGAAAGACACCAGCACTGAGGCGCTCT............................................................................................................................................... 27 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................TGAGCCTTGGCAGAGCCTGGAAGCCCCAC............................................................................................................... 29 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................GCAGCCCAGAAGAACGAGAGCGGATGA................... 27 1 2.00 2.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............CAGTAGCCTTGAAAGACACCAGCACT......................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...................................................................................................................................................................AGCGGATGATCAAGCAGCTGAAGGAGGt 28 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................TTGCAGAGCTTCTGCTGAGGaa................................................................................ 22 aa 1.00 9.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................AGCCTTGGCAGAGCCTGGAAGCCCCACC.............................................................................................................. 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................AACGAGAGCGGATGATCAAGCAG........... 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................ACCTTGCAGAGCTTCTGCTGAG................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..........................................................................................TGCAGAGCTTCTGCTGAGGCTaat............................................................................. 24 aat 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
........................................................................................................................................................AGAAGAACGAGAGCGGATGATC................. 22 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.....................TGAAAGACACCAGCACTGAGGCGCTCTT.............................................................................................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................TTGCAGAGCTTCTGCTGAGGtaa............................................................................... 23 taa 1.00 9.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................................................GTGAGCCTTGGCAGAGCCTGGAAGCC................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................TTGCAGAGCTTCTGCTGtgag................................................................................. 21 tgag 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................................................AAAAGCAGCCCAGAAGAACGAGAGCG........................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...................................................TGAGCCTTGGCAGAGCCTGGAAG..................................................................................................................... 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................AGAACGAGAGCGGATGATCAAGCAGC.......... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..........................................................................................................................................................AAGAACGAGAGCGGATGATCAAGtagc.......... 27 tagc 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................CGAGAGCGGATGATCAAGCAGCTGA....... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................TGCAGAGCTTCTGCTGAGGCTTTag............................................................................ 25 ag 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................GTGAGCCTTGGCAGAGCCTGGAAG..................................................................................................................... 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................AAAGCAGCCCAGAAGAACGAGAGCGGA...................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...................................................TGAGCCTTGGCAGAGCCTGGAAGCCCt................................................................................................................. 27 t 1.00 4.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................AGCAGCCCAGAAGAACGAGAGCGGA...................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...GCCTGACCACAGTAGCCTTGAAAGACA................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..........................................................................................TGCAGAGCTTCTGCTGAGGtttt.............................................................................. 23 tttt 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................TTGGCAGAGCCTGGAAGCCCCACC.............................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................TGCAGAGCTTCTGCTGAGGtaa............................................................................... 22 taa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
......TGACCACAGTAGCCTTGAAAGACACCA.............................................................................................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................AAGCAGCTGAAGGAGGAaag 20 aag 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................TGCAGAGCTTCTGCTGAGGttt............................................................................... 22 ttt 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................GAAGAACGAGAGCGGAg..................... 17 g 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................CAGAAGAACGAGAGCGGA...................... 18 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................TGCAGAGCTTCTGCTGAGGCTTT.............................................................................. 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
..........................................................................................TGCAGAGCTTCTGCTGAGGCatt.............................................................................. 23 att 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................................GCCCAGAAGAACGAGAGCGGA...................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..................................................GTGAGCCTTGGCAGAGCCTGGAAGCCCCACC.............................................................................................................. 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................................................................AGAAGAACGAGAGCGGATGATCAAGCAt........... 28 t 1.00 4.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................TTGCAGAGCTTCTGCTGAGGa................................................................................. 21 a 1.00 9.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................GATGATCAAGCAGCTGAAGGA... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.........................................................TTGGCAGAGCCTGGAAGCCCCACCACC........................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..........................................................................................................................................................AAGAACGAGAGCGGATG.................... 17 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................AAGCAGCCCAGAAGAACGAGAGCGG....................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................AGCCTTGGCAGAGCCTGGAAGC.................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.........................AGACACCAGCACTGAGGCGCTCTTGa............................................................................................................................................ 26 a 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................CCTTGCAGAGCTTCTGCTGAGt.................................................................................. 22 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................ACCAGCACTGAGGCGCT................................................................................................................................................. 17 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................TGCAGAGCTTCTGCTGAGGtat............................................................................... 22 tat 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................ACCTTGCAGAGCTTCTGCTGAGt.................................................................................. 23 t 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..............................................................................................................................................................ACGAGAGCGGATGATCAAGCAGCTGAAGGA... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
........................AAGACACCAGCACTGAGGCGCTCT............................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................TGAGCCTTGGCAGAGCCTGGAAGCCa.................................................................................................................. 26 a 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................TTGAAAGACACCAGCACTGAGGCGCTCT............................................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................AGAACGAGAGCGGATGATCAAGCAG........... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................GCACTGAGGCGCTCTTG............................................................................................................................................. 17 2 0.50 0.50 - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - -
...................................................TGAGCCTTGGCAGAG............................................................................................................................. 15 19 0.05 0.05 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.05 - - -

Antisense strand
ATGGCCTGACCACAGTAGCCTTGAAAGACACCAGCACTGAGGCGCTCTTGGTGAGCCTTGGCAGAGCCTGGAAGCCCCACCACCCCACCTTGCAGAGCTTCTGCTGAGGCTTTCCCCAATTTTGTGCTTTTGCTCTCCTAGAAAAGCAGCCCAGAAGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGGA
....................................................((((((..((((((((((.(((..............))).))).))).))))..))))))...............................................................................
..................................................51............................................................113............................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)