chr8:24367229 24367541 -
(6)
OTHER.mut 		(5)
PIWI.ip 		(2)
PIWI.mut 		(26)
TESTES

Sense strand
TAAGCGGCGACGGAGGTGGCGCGACAGCTGCTGGAGGGCCGAGGAGGCGGGTTTGTGTTTCCAGGGCCGAACCAGGATGTGGGGGGGCGCGGGTCCTGGGCTTGGGTAGCTTGGAGTCCCTCGGCTACAGCCATGAGTGAAGGGGATCGGCGAGGGGGGAGGCCTGGGGCGTCTTTGGGCGGTGGGTGGCTCCGAAGGGCTGGCGGGCCGGAGAGCCGGCTCTAGGCCGGCCATCTGACCCCGTGTCTTGCCCGAACTCGCAGAGCGGCGGGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCACCGGTGTCCG


 Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesWT2()
Testes Data. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		mjTestesWT3()
Testes Data. (testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
........................................................................CAGGATGTGGGGGGGCGC............................................................................................................................................................................................................................... 18 1 5.00 5.00 5.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TGTCTTGCCCGAACTCGCAGAGCGGC............................................ 26 2 3.50 3.50 3.50 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................TTGCCCGAACTCGCAGAG................................................ 18 3 2.33 2.33 - - - - 2.33 - - - - - - - - - - - - - - - - - - - - -
.....................................................................AACCAGGATGTGGGGGGGCGa............................................................................................................................................................................................................................... 21 a 2.00 0.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................GAACCAGGATGTGGatct................................................................................................................................................................................................................................... 18 atct 2.00 0.00 - - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - - - -
...............................TGGAGGGCCGAGGAGGCGGtt..................................................................................................................................................................................................................................................................... 21 tt 2.00 0.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................CCAGGATGTGGGGGGGC................................................................................................................................................................................................................................. 17 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
............................TGCTGGAGGGCCGAGGAGGCGGagc.................................................................................................................................................................................................................................................................... 25 agc 2.00 0.00 - - - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - - -
............................................................................................................................................................................CTTTGGGCGGTGGGTGG............................................................................................................................ 17 3 1.33 1.33 1.33 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................GCTGCTGGAGGGCCGAGGAGGCGG....................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.....................................................................................................................................................................................GTGGGTGGCTCCGAAGGGCTGGCGG........................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.................GGCGCGACAGCTGCTGGAGGGCCGAG.............................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................CAGGATGTGGGGGGGCGCGG............................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
............................TGCTGGAGGGCCGAGGAGGCGGagcg................................................................................................................................................................................................................................................................... 26 agcg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................CGCGACAGCTGCTGGAGGGCCGAG.............................................................................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........CGGAGGTGGCGCGACAGCTGCTGGAG..................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................AAGGGCTGGCGGGCCGGAGAGCCGGC............................................................................................. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................................................................................................GAGTGAAGGGGATCGGCGt................................................................................................................................................................ 19 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..AGCGGCGACGGAGGTGGCGCGACAGC............................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........................AGCTGCTGGAGGGCCGAGGAGGCGGG...................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................AACCAGGATGTGGatct................................................................................................................................................................................................................................... 17 atct 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................GCCGAACCAGGATGTGG....................................................................................................................................................................................................................................... 17 2 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................TGAGGCCGCAGCAGGCACCGGTGTC.. 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.................................................................................................................................................................................................GAAGGGCTGGCGGGCCGGAGAGCCGG.............................................................................................. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................AGGATGTGGGGGGGCGCG.............................................................................................................................................................................................................................. 18 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....CGGCGACGGAGGTGGCGCGAC................................................................................................................................................................................................................................................................................................ 21 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................CAGGATGTGGGGGGGCGCGGGT........................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
...........................................................................................................................................................................TCTTTGGGCGGTGGGTGGCTCCGAA..................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...................................................................................................................................................................................................................................................................................TGTCCTCGCCATGAGGCCGCAGCAGGa........... 27 a 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
................................................................................................TGGGCTTGGGTAGCTTGGAGTCCCTCGGC............................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...............................TGGAGGGCCGAGGAGGCGGagcg................................................................................................................................................................................................................................................................... 23 agcg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGAGTGAAGGGGATCGGCGAGGGa............................................................................................................................................................ 24 a 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......GCGACGGAGGTGGCGCGACAGCTGCT......................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................................................................................................................TGGCGGGCCGGAGAGCgct.............................................................................................. 19 gct 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................CCGAACTCGCAGAGCGGCGGG......................................... 21 2 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................CGAGGAGGCGGGTTTGTG................................................................................................................................................................................................................................................................ 18 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................CCCCGTGTCTTGCCCGAACTCGCA................................................... 24 3 0.67 0.67 - - - - - - 0.67 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TCTTTGGGCGGTGGGTGG............................................................................................................................ 18 2 0.50 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGAGTGAAGGGGATCGGCGAGGGGa........................................................................................................................................................... 25 a 0.50 0.50 - - - - - - - - - - - - - - - - - - - - 0.50 - - - - -
.................................................................................................................................................................................................................................................CGTGTCTTGCCCGAACTCGCAGAGCGGC............................................ 28 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................GTGTCTTGCCCGAACTCGCAGAGCGGC............................................ 27 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................TGAGGCCGCAGCAGGCACCGGTGT... 24 2 0.50 0.50 - - - - - - 0.50 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGAGTGAAGGGGATCGGCGAGGGGG........................................................................................................................................................... 25 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - - -
........................................................................................................................TCGGCTACAGCCATGAGTGAAGGGGATCG.................................................................................................................................................................... 29 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - 0.50 - - - - -
.....................................................................AACCAGGATGTGGGGGGG.................................................................................................................................................................................................................................. 18 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - - -
...................................................................CGAACCAGGATGTGGGGGGG.................................................................................................................................................................................................................................. 20 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGAGTGAAGGGGATCGGCGAGGGG............................................................................................................................................................ 24 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................CCGAACTCGCAGAGCGGCGG.......................................... 20 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................GTGAAGGGGATCGGCGAGGGGGGAGG....................................................................................................................................................... 26 2 0.50 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TCTTTGGGCGGTGGGTGGCT.......................................................................................................................... 20 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - 0.50 - -
.........................................................................................................................................TGAAGGGGATCGGCGAGGGGGGAG........................................................................................................................................................ 24 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................CCGTGTCTTGCCCGAACTCGCAG.................................................. 23 3 0.33 0.33 - - - - - - - - - 0.33 - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................TCTGACCCCGTGTCTTGCCCGAACTCGCAG.................................................. 30 3 0.33 0.33 - - - - - - - - - - 0.33 - - - - - - - - - - - - - - -
..................................................................................................................................................................CCTGGGGCGTCTTTGGG...................................................................................................................................... 17 3 0.33 0.33 - - 0.33 - - - - - - - - - - - - - - - - - - - - - - -
..............................CTGGAGGGCCGAGGA............................................................................................................................................................................................................................................................................ 15 7 0.29 0.29 - - - - - - - - - - - - - - - - - - - - - - - 0.29 - -

Antisense strand
TAAGCGGCGACGGAGGTGGCGCGACAGCTGCTGGAGGGCCGAGGAGGCGGGTTTGTGTTTCCAGGGCCGAACCAGGATGTGGGGGGGCGCGGGTCCTGGGCTTGGGTAGCTTGGAGTCCCTCGGCTACAGCCATGAGTGAAGGGGATCGGCGAGGGGGGAGGCCTGGGGCGTCTTTGGGCGGTGGGTGGCTCCGAAGGGCTGGCGGGCCGGAGAGCCGGCTCTAGGCCGGCCATCTGACCCCGTGTCTTGCCCGAACTCGCAGAGCGGCGGGTCCTGTCCTCGCCATGAGGCCGCAGCAGGCACCGGTGTCCG


 Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesWT2()
Testes Data. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		mjTestesWT3()
Testes Data. (testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
............................................................................................................................................................................................................................................GACCCCGTGTCTTGCCCGAACTCGCA................................................... 26 3 1.33 1.33 - - - - - 0.67 - - - - - - - - - - 0.33 - - - - - - - - 0.33
...........................................................................................................................................................................................................................................................................CGGGTCCTGTCCTCGCCATGAGGCCGCAt................. 29 t 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..............................................................................................................................................................................................................................................CCCCGTGTCTTGCCCGAACTCGCA................................................... 24 3 0.67 0.67 - - 0.67 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................ACCCCGTGTCTTGCCCGAACTC...................................................... 22 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - 0.33 -
..............................................................................................................................................................................................................................................CCCCGTGTCTTGCCCGAACTC...................................................... 21 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - 0.33 -