(6)
OTHER.mut
(5)
PIWI.ip
(3)
PIWI.mut
(25)
TESTES

Sense strand
GCCCAGGCTGAGAATGTGGCTGGGCAGATCAGGCCACTTTGGGTATCTTGAAGTAGCTCCTGTGCTACTTAGTGTCAGCACAGGACCTGAGTGGCTTTGAAGTGATGTTGTCTTCGAAGTGCTCAGGCCCATGCTTGGTGGCCGGTAGGGAGACTTGCCCCAGCTCCTCAGTCAAGTCACACTGCTCTTTTCCCTCCTAGATCTGCAGGTGGCATTTGACATTGTGTGTGACAATGTGGGGAGAGACTGG
.............................................................................................(((((((((.........)))))))))((((((((....)))))..))).((((((....))))))...........................................................................................
............................................................................................93..................................................................161.......................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
.....................................................................................................................................................................................................TAGATCTGCAGGTGGCATTTGACATT........................... 26 1 28.00 28.00 10.00 7.00 - 2.00 2.00 5.00 2.00 - - - - - - - - - - - - - - - - - -
........TGAGAATGTGGCTGGGCAGATCAGG......................................................................................................................................................................................................................... 25 1 6.00 6.00 - - 1.00 - - - - 1.00 - - 3.00 - - 1.00 - - - - - - - - - - -
..................................................................................................................................................................................................TCCTAGATCTGCAGGTGGCATTTGACA............................. 27 1 5.00 5.00 2.00 1.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TCCTAGATCTGCAGGTGGCATTTGACAT............................ 28 1 5.00 5.00 2.00 - - - 1.00 - - 2.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TCCTAGATCTGCAGGTGGCATTTGAC.............................. 26 1 4.00 4.00 1.00 1.00 - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - -
.................................................................................................TGAAGTGATGTTGTCTTCGAAGTGCTC.............................................................................................................................. 27 1 4.00 4.00 - - - - - - - - 1.00 1.00 - - - - - - - 1.00 - 1.00 - - - - -
................................................................................................................................................................................................................................TGTGTGACAATGTGGGGAGAGACTGG 26 1 4.00 4.00 - - - - 1.00 - - - - - 1.00 - - - 1.00 - - - - - - - 1.00 - -
.........................................................................................................TGTTGTCTTCGAAGTGCTCAGGCCCA....................................................................................................................... 26 1 3.00 3.00 - - - 2.00 - - - - - - - - 1.00 - - - - - - - - - - - -
........TGAGAATGTGGCTGGGCAGATCAGGCC....................................................................................................................................................................................................................... 27 1 3.00 3.00 1.00 - - - - - 1.00 - - - - - - - - - - 1.00 - - - - - - -
..............................................................................................................................................................................................................................TGTGTGTGACAATGTGGGGAGAGACTG. 27 1 3.00 3.00 - 1.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - -
.................................................................................................................TCGAAGTGCTCAGGCCCATGCTTGGTG.............................................................................................................. 27 1 2.00 2.00 - - - - - - - - - 1.00 - - 1.00 - - - - - - - - - - - -
...................................................................................................................................TGCTTGGTGGCCGGTAGGGAGACTTG............................................................................................. 26 1 2.00 2.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - 1.00 -
...CAGGCTGAGAATGTGGCTGGGCAGAT............................................................................................................................................................................................................................. 26 1 2.00 2.00 - - - - - - - - - - - - - - - 2.00 - - - - - - - - -
..............................................................................................................................................................................................................................TGTGTGTGACAATGTGGGGAGAGACT.. 26 1 2.00 2.00 - - - - - - - - - - - - - - 2.00 - - - - - - - - - -
.................................................................................AGGACCTGAGTGGCTTTGAAGT................................................................................................................................................... 22 1 2.00 2.00 - - - - - - - - - - - - - - - - 2.00 - - - - - - - -
.....................................................................TAGTGTCAGCACAGGACCTGAGTGGC........................................................................................................................................................... 26 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
........TGAGAATGTGGCTGGGCAGATCAGGC........................................................................................................................................................................................................................ 26 1 2.00 2.00 - - 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - -
..................................................................................................................................................................................................TCCTAGATCTGCAGGTGGCATTTGACATT........................... 29 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGTGTGTGACAATGTGGGGAGAGAC... 25 1 2.00 2.00 - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................GTGTGTGACAATGTGGGGAGAGACTGGt 28 t 2.00 0.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................TGTTGTCTTCGAAGTGCTCAGGCCCAT...................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.......CTGAGAATGTGGCTGGGCAGATCAGGC........................................................................................................................................................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TGTGACAATGTGGGGAGAGACTGG 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................GTGTGACAATGTGGGGAGAGACaaaa 26 aaaa 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................TGGGCAGATCAGGCCACTTTGGGTATCT.......................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................TGACATTGTGTGTGACAATGTGGGGAG....... 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
....................................................................................................................................................................................................CTAGATCTGCAGGTGGCATTTGACATT........................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................TGAAGTAGCTCCTGTGCTACTTAGTGTC.............................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................TCGAAGTGCTCAGGCCCATGCTTGG................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.............................................................................................................................................................................................................................TTGTGTGTGACAATGTGGGGAGAGACTGa 29 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
............................................................................AGCACAGGACCTGAGTGGCTTTGAAGT................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
......................................................................................................TGATGTTGTCTTCGAAGTGCTCAGGCCC........................................................................................................................ 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................CACAGGACCTGAGTGGCTTTGA...................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.................................................................................AGGACCTGAGTGGCTTTGAA..................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.....GGCTGAGAATGTGGCTGGGCAGATCAGGC........................................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TTTTCCCTCCTAGATCTGCAGGTGGCAT................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
......................................................................................................................................................................................................AGATCTGCAGGTGGCATTTGACATT........................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................GATCTGCAGGTGGCATTTGACATTG.......................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TTGGTGGCCGGTAGGGAGACTTGCCCCA........................................................................................ 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
........................................................................TGTCAGCACAGGACCTGAGTGGCTTT........................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................AGATCTGCAGGTGGCATTTGACATTGTG........................ 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.....................................................................................................................................................................................................TAGATCTGCAGGTGGCATTTGACA............................. 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TAGATCTGCAGGTGGCATTTGACAT............................ 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................TAGTGTCAGCACAGGACCTGAGTGG............................................................................................................................................................ 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................TGCTCTTTTCCCTCCTAGATCTGCAGGT........................................ 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................GTGATGTTGTCTTCGAAGTGCTCAG............................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.................................................................................AGGACCTGAGTGGCTTTGAAGTGt................................................................................................................................................. 24 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00
................................................................................................TTGAAGTGATGTTGTCTTCGAAGTGCT............................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
........................................................................................................................................................................................................................TGACATTGTGTGTGACAATGTGGGGA........ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...........................................................................................................................................................................................................TGCAGGTGGCATTTGACATTGTGTGT..................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................TGGGTATCTTGAAGTAGCTCCTGTGC......................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGTGTGTGACAATGTGGGGAGAGA.... 24 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.......................................................................................................................................................................................................GATCTGCAGGTGGCATTTGACATc........................... 24 c 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
....................................................................TTAGTGTCAGCACAGGACCTGAGTGGC........................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TCTGCAGGTGGCATTTGACATTGTGTG...................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TGTGACAATGTGGGGAGAGACTGGaat 27 aat 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
................................................................................................TTGAAGTGATGTTGTCTTCGAAGTGC................................................................................................................................ 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................GATGTTGTCTTCGAAGTGCTCAGGCCC........................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
................................................................................................................................................................................................................................TGTGTGACAATGTGGGGAGAGACTGt 26 t 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TGTGACAATGTGGGGAGAGACTGa 24 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
........TGAGAATGTGGCTGGGCAGATCAGGgc....................................................................................................................................................................................................................... 27 gc 1.00 6.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
GCCCAGGCTGAGAATGTGGCTGGGCAGATCAGGCCACTTTGGGTATCTTGAAGTAGCTCCTGTGCTACTTAGTGTCAGCACAGGACCTGAGTGGCTTTGAAGTGATGTTGTCTTCGAAGTGCTCAGGCCCATGCTTGGTGGCCGGTAGGGAGACTTGCCCCAGCTCCTCAGTCAAGTCACACTGCTCTTTTCCCTCCTAGATCTGCAGGTGGCATTTGACATTGTGTGTGACAATGTGGGGAGAGACTGG
.............................................................................................(((((((((.........)))))))))((((((((....)))))..))).((((((....))))))...........................................................................................
............................................................................................93..................................................................161.......................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
.......................................................................................................GATGTTGTCTTCGAAGTGCTCAGGCCCA....................................................................................................................... 28 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................CAGCTCCTCAGTCAAGTCACACTGCTC............................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................GCTCTTTTCCCTCCTAGATCTGC............................................ 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................GCTCCTCAGTCAAGTCACACTGCTCT.............................................................. 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
......................................................................................................GTTGTCTTCGAAGTcact.................................................................................................................................. 18 cact 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -