| Gene: Lrdd | ID: uc009kle.1_intron_14_0_chr7_148629253_r.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(5) PIWI.ip |
(1) PIWI.mut |
(18) TESTES |
| GGAAGGCAGCACAGAGCGCGCCTAGACTGGCGGGGAGATCAGCGTGGCAGGTACTCAATGGGAGGCGGGAAGTTTGCTCCAGAGGCGGGACCAAAGCGATTCCTCACCTACCGAGACCCCCTCTGCTTTCCCCATTTGACGGAGGTGTGAATTGGGAATTGTGGCTCAAGAGTGTCTACTAGGGACCGCGATATGGGACCCTAGCACAAGAACCCCAAAGTCCTCTTGGCTCCCCTTCGCACTGTTTACT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM475281(GSM475281) total RNA. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................AGGTACTCAATGGGAGGC........................................................................................................................................................................................ | 18 | 1 | 4.00 | 4.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ......................................TCAGCGTGGCAGGTACTCAATGGGAGGC........................................................................................................................................................................................ | 28 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - |
| ...........................................................................................................................TGCTTTCCCCATTTGACGGAGGTGTG..................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TGGCGGGGAGATCAGCGTGGCAGGTACTCt................................................................................................................................................................................................. | 30 | t | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TACTCAATGGGAGGCGGGAAGTTTGC............................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................TGACGGAGGTGTGAATTGGGAATTGT........................................................................................ | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................CGGAGGTGTGAATTGGGAATTGTGG...................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .........................................................................TTGCTCCAGAGGCGGGACCA............................................................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TGGGAATTGTGGCTCAAGAGTGTCT......................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TACTCAATGGGAGGCGGGAAGTTTG.............................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................TGACGGAGGTGTGAATTGGGAATT.......................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................TCAGCGTGGCAGGTACTCAATGGGAGtc........................................................................................................................................................................................ | 28 | tc | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................GCGCCTAGACTGGCGGGGAGgt................................................................................................................................................................................................................... | 22 | gt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ......................................................................................................................................TTTGACGGAGGTGTGAATTGGGAA............................................................................................ | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TGTGGCTCAAGAGTGTCTACTAGGGACCGC............................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ....................................GATCAGCGTGGCAGGTACTCAATGG............................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............AGCGCGCCTAGACTGGCGGGGgg..................................................................................................................................................................................................................... | 23 | gg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................AGGTGTGAATTGGGAATTGTGGCTC................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................GACGGAGGTGTGAATTGGGAATTG......................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...............................................................................................................................................................................................TATGGGACCCTAGCACAAGAACCCCAA................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................CCATTTGACGGAGGTGTGAATTGGGA............................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ................................................AGGTACTCAATGGGAGGCG....................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................TCAGCGTGGCAGGTACTCAATGGGAGGg........................................................................................................................................................................................ | 28 | g | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................TTTGACGGAGGTGTGAATTGGGAATT.......................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................GACGGAGGTGTGAATTGGGAATTGTGGCTC................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GGAAGGCAGCACAGAGCGCGCCTAGACTGGCGGGGAGATCAGCGTGGCAGGTACTCAATGGGAGGCGGGAAGTTTGCTCCAGAGGCGGGACCAAAGCGATTCCTCACCTACCGAGACCCCCTCTGCTTTCCCCATTTGACGGAGGTGTGAATTGGGAATTGTGGCTCAAGAGTGTCTACTAGGGACCGCGATATGGGACCCTAGCACAAGAACCCCAAAGTCCTCTTGGCTCCCCTTCGCACTGTTTACT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | GSM475281(GSM475281) total RNA. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................TCAAGAGTGTCTAcgg........................................................................ | 16 | cgg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................GGAATTGTGGCTCAAGAGTGTCTACTA..................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................GAATTGTGGCTCAAGAGTGTCTACTA..................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |