(6)
OTHER.mut
(7)
PIWI.ip
(3)
PIWI.mut
(28)
TESTES

Sense strand
GCTGCCAAGCAGGCCTGCGTGTCTCCTGGTGGCCAGCGGCGCTTCCGAAGGTGAGGCGCGCAGGGCAGCTGTGTAGCTCACTGGCCTGCAGTCCTGACTCTGGGCAAACGTTTGTGTTTGTGGAGTTGAGATTCTGGGACCCTGCATCTGTTTCTCTGGCGCAGGCCTACTATGTTGTCTGCGCTGGCAGACAGGGACGGTCAGCGGCTGCAGAGATGACCCTGCCCCCGAGTGAGCCGCAGGGGCTTGG
.............................................................................................................(((((((((...((((...((((..(((....))).))))....)))))))))))))....................................................................................
...........................................................................................................108...............................................................174..........................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
..............................................................................................................................................TGCATCTGTTTCTCTGGCGCAGGCCTAC................................................................................ 28 1 9.00 9.00 - - - - - 1.00 - 2.00 - - - 1.00 - 4.00 - - - 1.00 - - - - - - - - - -
..............................................................................................................................................TGCATCTGTTTCTCTGGCGCAGGC.................................................................................... 24 1 6.00 6.00 - 6.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............TGCGTGTCTCCTGGTGGCCAGCGGCGC................................................................................................................................................................................................................ 27 1 5.00 5.00 - - - 1.00 3.00 - - - - - - - - - - - - - - - - - - - 1.00 - - -
................................................................................................................TGTGTTTGTGGAGTTGAGATTCTGG................................................................................................................. 25 1 3.00 3.00 1.00 - - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................................................................TGCATCTGTTTCTCTGGCGCAGGCCTA................................................................................. 27 1 3.00 3.00 - - - - - 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGTGGAGTTGAGATTCTGGGACCCTGC......................................................................................................... 27 1 3.00 3.00 - - 2.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................GTGTCTCCTGGTGGCCAGCG.................................................................................................................................................................................................................... 20 1 3.00 3.00 - - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGGGACCCTGCATCTGTTTCTCTGGC.......................................................................................... 26 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............TGCGTGTCTCCTGGTGGCCAGCGGCGCT............................................................................................................................................................................................................... 28 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGGGACCCTGCATCTGTTTCTCTGG........................................................................................... 25 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
...............................................................................................................TTGTGTTTGTGGAGTTGAGATTCTGG................................................................................................................. 26 1 2.00 2.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.........................................................................TAGCTCACTGGCCTGCAGTCCTGAC........................................................................................................................................................ 25 1 2.00 2.00 - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - -
....................................................................................................................................................TGTTTCTCTGGCGCAGGCCTACTATGTTGTC....................................................................... 31 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................................................................TGCATCTGTTTCTCTGGCGCAGGCgta................................................................................. 27 gta 1.00 6.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..............................................GAAGGTGAGGCGCGCAGGGCAGCTGTG................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
........GCAGGCCTGCGTGTCTCCTGGTGGCC........................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TGAGATTCTGGGACCCTGCATCcgtt.................................................................................................. 26 cgtt 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGTGGAGTTGAGATTCTGGGACCCTGa......................................................................................................... 27 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................GGAGTTGAGATTCTGGGACCCTGCATC...................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................................................................................................................GTGGAGTTGAGATTCTGGGACCCTGCATCTG.................................................................................................... 31 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................TGTGTTTGTGGAGTTGAGATTCTGGG................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
......................................................................................................................TGTGGAGTTGAGATTCTGGGACC............................................................................................................. 23 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................................................CTGCAGTCCTGACTCTGGGCAAACG............................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.............................................................................................................................................................................................GACAGGGACGGTCAGCGGCTGCAGA.................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TGAGATTCTGGGACCCTGCATCTGT................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.......................................................................TGTAGCTCACTGGCCTGCAGTCCTGA......................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
........GCAGGCCTGCGTGTCTCCTGGTGGC......................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............................................................................................................................................TGCATCTGTTTCTCTGGCGCAGGCCT.................................................................................. 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................CTCTGGGCAAACGTTTGTGTTTGTGGAG............................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................................................................................................................TGTTTGTGGAGTTGAGATTCTGGGA............................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
....................................................................................................TGGGCAAACGTTTGTGTTTGTGGAGTT........................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................TGTGTAGCTCACTGGCCTGCAGTCCTGt......................................................................................................................................................... 28 t 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................AGGCCTACTATGTTGTCTGCG................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
................................................................................................................TGTGTTTGTGGAGTTGAGA....................................................................................................................... 19 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TGAGATTCTGGGACCCTGCATCTGTT.................................................................................................. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................TCCGAAGGTGAGGCGCGCAGGGCA....................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.....CAAGCAGGCCTGCGTGT.................................................................................................................................................................................................................................... 17 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................TGTGTTTGTGGAGTTGAGATTatgg................................................................................................................. 25 atgg 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................GTGGAGTTGAGATTCTGGGACCCTGC......................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................TGTGTAGCTCACTGGCCTGCAGTC............................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
...............TGCGTGTCTCCTGGTGGCCAGCGGCGa................................................................................................................................................................................................................ 27 a 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................................................TGAGGCGCGCAGGGCAGCTGTGTAG.............................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...............TGCGTGTCTCCTGGTGGCCAGCGGggc................................................................................................................................................................................................................ 27 ggc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
............................................................................................................................................................................................AGACAGGGACGGTCAGCGGtgg........................................ 22 tgg 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................CCGAAGGTGAGGCGCGCAGGGCAGC..................................................................................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TTGTGTTTGTGGAGTTGAGATTCTGGGA............................................................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................................AGGCGCGCAGGGCAGCTG................................................................................................................................................................................... 18 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................GTGGCCAGCGGCGCTTCCGAAGGTG..................................................................................................................................................................................................... 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....CAAGCAGGCCTGCGTGTCTCC................................................................................................................................................................................................................................ 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
................................................................................................................TGTGTTTGTGGAGTTGAGATTCTa.................................................................................................................. 24 a 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GATGACCCTGCCCCCGAGTGAGCCGCA......... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................TGTGTTTGTGGAGTTGAGATTCTtgg................................................................................................................ 26 tgg 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................TCTGGGACCCTGCATCTGTTTCTCTGG........................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................ACTGGCCTGCAGTCC............................................................................................................................................................ 15 15 0.07 0.07 0.07 - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
GCTGCCAAGCAGGCCTGCGTGTCTCCTGGTGGCCAGCGGCGCTTCCGAAGGTGAGGCGCGCAGGGCAGCTGTGTAGCTCACTGGCCTGCAGTCCTGACTCTGGGCAAACGTTTGTGTTTGTGGAGTTGAGATTCTGGGACCCTGCATCTGTTTCTCTGGCGCAGGCCTACTATGTTGTCTGCGCTGGCAGACAGGGACGGTCAGCGGCTGCAGAGATGACCCTGCCCCCGAGTGAGCCGCAGGGGCTTGG
.............................................................................................................(((((((((...((((...((((..(((....))).))))....)))))))))))))....................................................................................
...........................................................................................................108...............................................................174..........................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
................................................................................................................................................CATCTGTTTCTCTGGCGCAGGCCTACTA.............................................................................. 28 1 5.00 5.00 - - 3.00 - - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................CTGGGCAAACGTTTGTGTTTGTGGAGTT........................................................................................................................... 28 1 4.00 4.00 - - - - - - 4.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................GCATCTGTTTCTCTGGCGCAGGCCTACTA.............................................................................. 29 1 3.00 3.00 1.00 - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
....................................................................................CCTGCAGTCCTGACTCTGGGCAAACGT........................................................................................................................................... 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................TCTGGCGCAGGCCTACTATGTTGTC....................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
....................................................................................CCTGCAGTCCTGACTCTGGGCA................................................................................................................................................ 22 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................CCTGGTGGCCAGCGGCGCTTCCGAA......................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................GCAGACAGGGACGGTCAGCGGCTGCA...................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................GCAGTCCTGACTCTGGGCAAACGTTTGTG...................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
....................................................................CTGTGTAGCTCACTGGCCTGCAGTCCT........................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................................................................TCTCTGGCGCAGGCCTACTA.............................................................................. 20 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................AACGTTTGTGTTTGTGGAGTTGAGA....................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............................................................................................................................................TGCATCTGTTTCTCTGGCGCAGGCCTA................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -