chr7:135841489 135841969 -
(3)
OTHER.mut 		(1)
OVARY 		(6)
PIWI.ip 		(2)
PIWI.mut 		(26)
TESTES

Sense strand
AACGAGCTTTAGAGCGCCGAGCGTGCAGGGAACGGCAAGCTACGGCCTCTGTGCGTGCAGTCCACAGTCCTTTACACCACATTGTTTTATAGGGAATTTGTATCCAAAAACACAGTGACTTTTCCTGAAATCAAGTCTGGTGACACCTAAAGTTTATATGATTCTCTGTAAGGGTTTTTACCTTACTGGTTTTATGGAGTTTTGGAGTTTGTTTTATAATTAGTTATGATGTACAAAAATGTATTTGATATTAAAGGTTTAATAATGATAATGTTGCTGATCACACCATTTTCTTAGCCACAGCTACATCTTAGGCCAGACTATGAAGTGCCAGCTTCCTCTGCAGAGTTATTTGAAGAGCTGTGTTAATTCAGAACAGGTCTGAGCGACAAGTTCGAGATATGACTTCTGTAGTGTCATTTTCTACACAGCTGCCACAGACGCAGTTTCCCACGTCCCAGCTGTACCAGCCGGCAGAACT
....................................................................................................................................................................................................................................................................................................................................................((((((((((((.....(((((.((((..((((((.....)))))).))))))))).....)))))).))))))...................................................................
...........................................................................................................................................................................................................................................................................................................................................332................................................................................................431................................................
 Size Perfect hit Total Norm Perfect Norm SRR037901(GSM510437)
testes_rep2. (testes) 		SRR037902(GSM510438)
testes_rep3. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR037903(GSM510439)
testes_rep4. (testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR014229(GSM319953)
10 dpp MILI. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR037897(GSM510433)
ovary_rep2. (ovary) 		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
...................AGCGTGCAGGGAACcaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 caaa 51.00 0.00 31.00 17.00 - - - - - - - - - 2.00 - - - - - - - 1.00 - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................TCTGAGCGACAAGTTCGAG.................................................................................. 19 1 3.00 3.00 - - - - - - - - 3.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCACGTCCCAGCTGTACCAGCCGGC...... 28 1 2.00 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - 1.00
............................................................................................................................................................................................................................................................................................................................................................TTATTTGAAGAGCTGTGTTAATTCAGAACAGG..................................................................................................... 32 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
..........................AGGGAACGGCAAGCTACGGCCTCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................. 26 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
...................AGCGTGCAGGGAACcata............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 cata 2.00 0.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................AGCGTGCAGGGAACcaca............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 caca 2.00 0.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......TTTAGAGCGCCGAGCGTGCAGGGAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACGTCCCAGCTGTACCAGCCGGCA..... 28 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................TGTTAATTCAGAACAGGTCTGAGCGAC........................................................................................... 27 1 2.00 2.00 - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................AGCGTGCAGGGAACGaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 aaa 2.00 0.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................ACGGCCTCTGTGCGTGCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.........................................................................................TAGGGAATTTGTATCCAAAAACACAGTG............................................................................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.............................................................................................................................................................................................................................................................................................................................................................................TTAATTCAGAACAGGTCTGAGCGACA.......................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................TCTGAGCGACAAGTTCGAGATATGACTT......................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.......................................................................................................CCAAAAACACAGTGACT......................................................................................................................................................................................................................................................................................................................................................................... 17 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................AAAATGTATTTGATATTAAAGG................................................................................................................................................................................................................................ 22 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................CCTCTGCAGAGTTATTTGAAGA.......................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.............................................................................................................................TGAAATCAAGTCTGGTGACACCTAAA.......................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................TAAAGGTTTAATAATGATAATGTTGCT........................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................AGCGTGCAGGGAACtaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 taaa 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................AGCGTGCAGGGAACGaga............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 aga 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................TATAGGGAATTTGTATCCAAAAACACAGTGA........................................................................................................................................................................................................................................................................................................................................................................... 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...................AGCGTGCAGGGAACctac............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 ctac 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................ACTATGAAGTGCCAGCTTCCT............................................................................................................................................. 21 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.ACGAGCTTTAGAGCGCCGAGCGTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................AGCGTGCAGGGAACcacg............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 cacg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TGGTTTTATGGAGTTTTGGAGTTTGT............................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................AGCTACGGCCTCTGTGCGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................GCAGGGAACGGCAAGCTACGGCCTCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................TGAGCGACAAGTTCGAGATATGACTTCTGTA.................................................................... 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..........................................................................................................................TCCTGAAATCAAGTCTGGTGACACCTAA........................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...............................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCTGTGTTAATTCAGAACAG...................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................ACACAGTGACTTTTCCTGAAATCAAGTC........................................................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................AGAACAGGTCTGAGCG............................................................................................. 16 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................AGAACAGGTCTGAGCGAC........................................................................................... 18 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................TTATAGGGAATTTGTATCCAAAAACACg............................................................................................................................................................................................................................................................................................................................................................................... 28 g 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................AGCGTGCAGGGAACcaga............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 caga 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................AGCGTGCAGGGAACcaat............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 caat 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................TAATAATGATAATGTTGCTGATCACAC................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCTGTGTTAAT............................................................................................................... 19 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - -

Antisense strand
AACGAGCTTTAGAGCGCCGAGCGTGCAGGGAACGGCAAGCTACGGCCTCTGTGCGTGCAGTCCACAGTCCTTTACACCACATTGTTTTATAGGGAATTTGTATCCAAAAACACAGTGACTTTTCCTGAAATCAAGTCTGGTGACACCTAAAGTTTATATGATTCTCTGTAAGGGTTTTTACCTTACTGGTTTTATGGAGTTTTGGAGTTTGTTTTATAATTAGTTATGATGTACAAAAATGTATTTGATATTAAAGGTTTAATAATGATAATGTTGCTGATCACACCATTTTCTTAGCCACAGCTACATCTTAGGCCAGACTATGAAGTGCCAGCTTCCTCTGCAGAGTTATTTGAAGAGCTGTGTTAATTCAGAACAGGTCTGAGCGACAAGTTCGAGATATGACTTCTGTAGTGTCATTTTCTACACAGCTGCCACAGACGCAGTTTCCCACGTCCCAGCTGTACCAGCCGGCAGAACT
....................................................................................................................................................................................................................................................................................................................................................((((((((((((.....(((((.((((..((((((.....)))))).))))))))).....)))))).))))))...................................................................
...........................................................................................................................................................................................................................................................................................................................................332................................................................................................431................................................
 Size Perfect hit Total Norm Perfect Norm SRR037901(GSM510437)
testes_rep2. (testes) 		SRR037902(GSM510438)
testes_rep3. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR037903(GSM510439)
testes_rep4. (testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR014229(GSM319953)
10 dpp MILI. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR037897(GSM510433)
ovary_rep2. (ovary) 		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
......................................................................................................................................................................................................................................................................................................................................AGTGCCAGCTTCCTCTGCAGAGTTATTTGA............................................................................................................................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.......................................................................................................................................................................................................................................................................................................ACAGCTACATCTTAcaga........................................................................................................................................................................ 18 caga 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TGACACCTAAAGTTgtat....................................................................................................................................................................................................................................................................................................................................... 18 gtat 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.....................................................................................................................................................................................................................................................................................................................................AAGTGCCAGCTTCCTCTGCAGAGTTA.................................................................................................................................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................CATTTTCTTAGCCACAG.................................................................................................................................................................................. 17 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - -