chr7:134549124 134549373 -
(5)
OTHER.mut 		(5)
PIWI.ip 		(4)
PIWI.mut 		(27)
TESTES

Sense strand
GTGCTTCTTAGACAACTGCACTTGGGATTGGGGACCACACAGACCCCTTTCTTTATGCTGCATCTGGACATCTGTGCACCGCACATGCTCAGATGCGGTGGTCTCTACCGTCCTGTGTCCAGTCTGTCCCCATGTGGCGCTGTGGAAATTAAGGGGCAGTAGAAGTCAGAGTCTGAGCTTTTTTCATGGTCTCCCAGCAGATTGCAGGCACGAGAAGGAAAGGAAGAGACCAAGAGAAGAGACTGAAGCA


 Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		mjTestesWT3()
Testes Data. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesWT2()
Testes Data. (testes) 		mjTestesWT4()
Testes Data. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		GSM509276(GSM509276)
small RNA cloning by length. (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR014229(GSM319953)
10 dpp MILI. (mili testes)
....................................................................................................................................TGTGGCGCTGTGGAAATTAAGGGG.............................................................................................. 24 1 5.00 5.00 1.00 1.00 - - 2.00 - - - - 1.00 - - - - - - - - - - - - - - - - -
....................................................................................................................................TGTGGCGCTGTGGAAATTAAGGGGC............................................................................................. 25 1 5.00 5.00 3.00 - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................TGTGGAAATTAAGGGGCAGTAGAAGT.................................................................................... 26 3 4.67 4.67 1.67 0.67 0.33 - - - 1.67 - - - 0.33 - - - - - - - - - - - - - - - -
............................................................................................................................................TGTGGAAATTAAGGGGCAGTAGAAGTC................................................................................... 27 3 2.67 2.67 0.67 0.67 0.67 - - - - 0.33 - - - - - - - - - - - - - - - - - 0.33 -
........TAGACAACTGCACTTGGGATTGGGGA........................................................................................................................................................................................................................ 26 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................TGTGGCGCTGTGGAAATTAAGGG............................................................................................... 23 1 2.00 2.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................................................................TGTGGAAATTAAGGGGCAGTAGAAG..................................................................................... 25 3 2.00 2.00 1.00 0.33 - 0.33 - - - - - - - - - - 0.33 - - - - - - - - - - - -
...................................................TTTATGCTGCATCTGGACATCTGTGC............................................................................................................................................................................. 26 2 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TTGCAGGCACGAGAAGGAAAGGAAGA....................... 26 3 2.00 2.00 - - 0.67 0.33 - - - - 0.67 - - - - 0.33 - - - - - - - - - - - - -
.................................................TCTTTATGCTGCATCTGGACATCTGTGC............................................................................................................................................................................. 28 2 1.50 1.50 - - - 0.50 - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................GAAGGAAAGGAAGAGACCAAGAGAAG........... 26 2 1.50 1.50 1.00 - - - - - - - - - - - - - - - - - 0.50 - - - - - - - -
.........................................GACCCCTTTCTTTATGCTGCATCTGGAC..................................................................................................................................................................................... 28 2 1.50 1.50 - - - 1.50 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TTGCAGGCACGAGAAGGAAAGGAAGAG...................... 27 3 1.33 1.33 - - 1.00 - - - - - - - 0.33 - - - - - - - - - - - - - - - -
......................................................................................................................................TGGCGCTGTGGAAATTAAGGGGCAGa.......................................................................................... 26 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................TTTCTTTATGCTGCATagt........................................................................................................................................................................................ 19 agt 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
......................................................................................................................................................................................................................AAGGAAAGGAAGAGACCAAGAGAAGA.......... 26 2 1.00 1.00 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................TTAAGGGGCAGTAGAAGTCAGAGTC............................................................................. 25 3 1.00 1.00 - 0.33 - - - - 0.67 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................AGGAAGAGACCAAGAGAAGAGACT...... 24 2 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......TTAGACAACTGCACTTGGGATTGGGGA........................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGGCGCTGTGGAAATTAAGGGGCAGT.......................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................AAGGAAGAGACCAAGAGAAGAGACTG..... 26 2 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................TCTTTATGCTGCATCTGGACATCTGT............................................................................................................................................................................... 26 2 1.00 1.00 - 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................CAGGCACGAGAAGGAAAGGAAGAGACC................... 27 3 1.00 1.00 - - - - - - - - 0.33 - - - 0.33 0.33 - - - - - - - - - - - - -
......................................................................................................................................................................................................................AAGGAAAGGAAGAGACCAAGAGAAG........... 25 2 1.00 1.00 - 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - -
........TAGACAACTGCACTTGGGATTGGG.......................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
............................................................................................................................................................................................................................AGGAAGAGACCAAGAGAAGAGACTGAAG.. 28 2 1.00 1.00 - 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................GTGGCGCTGTGGAAATTAAGGGGCAGTA......................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................TGTGGCGCTGTGGAAATTAAGGGGCAG........................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCAGGCACGAGAAGGAAAGGAAGAGA..................... 27 3 0.67 0.67 - - 0.67 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................AGATTGCAGGCACGAGAAGGAAAGG........................... 25 3 0.67 0.67 - - 0.33 - - - - - 0.33 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TAAGGGGCAGTAGAAGTCAGAGTCTGA.......................................................................... 27 3 0.67 0.67 0.33 - - - - - 0.33 - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................TGGAAATTAAGGGGCAGTAGAAGTCA.................................................................................. 26 3 0.67 0.67 - - - - - - - - 0.67 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................CAGATTGCAGGCACGAGAAGGAAAGGA.......................... 27 3 0.67 0.67 - - - - - - - 0.67 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TAAGGGGCAGTAGAAGTCAGAGTCTGAGC........................................................................ 29 3 0.67 0.67 - - - - - - 0.67 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................GGAAAGGAAGAGACCAAGAGAAGAGA........ 26 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................AAGGAAGAGACCAAGAGAAGAGACTGAA... 28 2 0.50 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................AAGGAAGAGACCAAGAGAAGAGACTGA.... 27 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................GAAGAGACCAAGAGAAGAGACTGAAGC. 27 2 0.50 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................CGAGAAGGAAAGGAAGAGACCAAGAGA............. 27 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - 0.50 - - - - -
........................................................GCTGCATCTGGACATCTGT............................................................................................................................................................................... 19 2 0.50 0.50 - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - -
..................................................................................................................................................................................TTTTTTCATGGTCTCCCAGCAGATTG.............................................. 26 2 0.50 0.50 - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - -
........................................................................................................................................................................................................................GGAAAGGAAGAGACCAAGAGAAGAGAC....... 27 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - 0.50 - - - -
.............................................................................................................................................................................................................................GGAAGAGACCAAGAGAAGAGACTGAAGC. 28 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................AAGGAAAGGAAGAGACCAAGAGAAGAGA........ 28 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................GAGACCAAGAGAAGAGACTGAA... 22 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - 0.50 - - -
.......................................................................................................................................................................................................................AGGAAAGGAAGAGACCAAGAGAAGAGA........ 27 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................GAAGTCAGAGTCTGAGCTTTTTTCATGGT............................................................ 29 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................AAGAGACCAAGAGAAGAGACTGAAGC. 26 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................AGGAAAGGAAGAGACCAAGAGAAGAGAC....... 28 2 0.50 0.50 - - - - - - - - - - - - - - - - - 0.50 - - - - - - - - -
..........................................................................................................................................................................GTCTGAGCTTTTTTCATGGTCTCCCAGC.................................................... 28 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - 0.50 - - - - - -
...............................................................................................................................................................................................................................AAGAGACCAAGAGAAGAGACTGAAGCA 27 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - 0.50 - - - - - - -
...............................................................................................................................................................................................TCCCAGCAGATTGCAGGCACGAGAAG................................. 26 4 0.50 0.50 - - - - - - - - 0.25 - 0.25 - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................AGGAAAGGAAGAGACCAAGAGAAGAG......... 26 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCAGGCACGAGAAGGAAAGGAAGAG...................... 26 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TAAGGGGCAGTAGAAGTCAGAGTCTG........................................................................... 26 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................ATTGCAGGCACGAGAAGGAAAGGAAGA....................... 27 3 0.33 0.33 - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TGTGGAAATTAAGGGGCAGTAGAAGa.................................................................................... 26 a 0.33 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.33
.........................................................................................................................................................................................................TTGCAGGCACGAGAAGGAAAGGAAGAGA..................... 28 3 0.33 0.33 - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................CAGATTGCAGGCACGAGAAGGAAAGG........................... 26 3 0.33 0.33 - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................TAAGGGGCAGTAGAAGTCAGAGTCT............................................................................ 25 3 0.33 0.33 - 0.33 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................CACGAGAAGGAAAGGAAGAGACCAAG................ 26 3 0.33 0.33 - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - -
..............................................................................................................................................................................................................GGCACGAGAAGGAAAGGAAGAGACCAA................. 27 3 0.33 0.33 - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................TGGAAATTAAGGGGCAGTAGAAGTC................................................................................... 25 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - 0.33 - -
............................................................................................................................................TGTGGAAATTAAGGGGCAGTAGAAGTCA.................................................................................. 28 3 0.33 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................GCAGATTGCAGGCACGAGAAGGAAAGG........................... 27 3 0.33 0.33 - - 0.33 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................CAGATTGCAGGCACGAGAAGGAAAGGt.......................... 27 t 0.33 0.33 - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - -
...............................................................................................................................................................................................TCCCAGCAGATTGCAGGCACGAGAAGG................................ 27 4 0.25 0.25 - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................ATGGTCTCCCAGCAGATTGCAGGCAC....................................... 26 4 0.25 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................TCATGGTCTCCCAGCAGA................................................. 18 6 0.17 0.17 - - - - - - - - - - 0.17 - - - - - - - - - - - - - - - -

Antisense strand
GTGCTTCTTAGACAACTGCACTTGGGATTGGGGACCACACAGACCCCTTTCTTTATGCTGCATCTGGACATCTGTGCACCGCACATGCTCAGATGCGGTGGTCTCTACCGTCCTGTGTCCAGTCTGTCCCCATGTGGCGCTGTGGAAATTAAGGGGCAGTAGAAGTCAGAGTCTGAGCTTTTTTCATGGTCTCCCAGCAGATTGCAGGCACGAGAAGGAAAGGAAGAGACCAAGAGAAGAGACTGAAGCA


 Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		mjTestesWT3()
Testes Data. (testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesWT2()
Testes Data. (testes) 		mjTestesWT4()
Testes Data. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		GSM509276(GSM509276)
small RNA cloning by length. (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR014229(GSM319953)
10 dpp MILI. (mili testes)
...........................................................................................................CCGTCCTGTGTCCAGTCTGTCCCCA...................................................................................................................... 25 1 2.00 2.00 - - - - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - -
...............CTGCACTTGGGATTGGGGACCACACA................................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -