(10)
OTHER.mut
(6)
PIWI.ip
(3)
PIWI.mut
(36)
TESTES

Sense strand
CTGAGGATCTTCAGGCTGCAAACCGGCTGATCAAGAATTTGGTCAAGGAAGTAGGCATTTCTGCAGTTGGCGCTGTAGATCTGGCATTTGACAGGGCTGATATGATAGTGTGTGTGGATGTGTGTTAAGGTGTGAAGAACAGCTAGCTTGGAGAAGAGATGTCCTCCTCATGCTGAATGGGACCAGCAGGATGGTGATTAGATTTGAGACTCCTTGCAGAGCTTCCCGGCTTCTTTTATCCATGGGACGAAGCTTTTGGTGTTAACAGAGTTAGGTTTGGGAGTCTGTTCCAGAAGGATTGAGTCTGAATGTACAGTTGAAGAGTCCCCAGGTCCAGAGACGATATTGTCACCTGCAGGAATTCTGGGCGAGCACCTCCGCTCACTTAAGTGTTCATGACTTCCTGAACTCCCAGCATGCACTGCCTTTCCCTTTCTGGTGTTTAGTTAGGAGTTACCCAGGCAACTCCTCTTACTTCTTCTGTCCATTTGGTTTCCCTCAAAGGAACAAGAGAAGTCTGAAAAGGTGTCCAGGCGAGTCAGTGCAGTAGAGGA
......................................................((((.((..((....(((((((..(((.(((..........))))))...))))))).))..)).))))...............................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51..............................................................................131.....................................................................................................................................................................................................................................................................................................................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
........................................................................................................ATAGTGTGTGTGGATGTGTGTat........................................................................................................................................................................................................................................................................................................................................................................................................................................... 23 at 46.00 12.00 14.00 14.00 6.00 1.00 4.00 - - - 2.00 - - 1.00 1.00 - 1.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - -
........................................................................................................ATAGTGTGTGTGGATGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................. 21 1 12.00 12.00 4.00 - 2.00 - - - 1.00 - - - - - 1.00 1.00 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAGGTGTCCAGGCGAGTCAGTG.......... 26 1 7.00 7.00 - - - 1.00 - - - 2.00 - - - 1.00 - - - - - - - - - - 1.00 - - - 1.00 1.00 - - - - - - - -
.TGAGGATCTTCAGGCTGCAAACCGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 4.00 4.00 - - - 1.00 - - - - - - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGAAGTCTGAAAAGGTGTCCAGGC................... 27 2 3.00 3.00 - - - - 1.00 - - - - 0.50 - - - - - - 1.00 - - - - - - - - - - - - - - - - - 0.50 -
..................................................GTAGGCATTTCTGCAGTTGGCGCTGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 2.00 2.00 - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................ATAGTGTGTGTGGATGTGTGTata.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 24 ata 2.00 12.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.TGAGGATCTTCAGGCTGCAAACCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCGAGTCAGTGCAGTAGAGGA 26 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................ATAGTGTGTGTGGATGTGTGTa............................................................................................................................................................................................................................................................................................................................................................................................................................................ 22 a 2.00 12.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAGGTGTCCAGGCGAGTCAGTGC......... 27 1 2.00 2.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGAAGTCTGAAAAGGTGTCCAGG.................... 26 2 1.00 1.00 - - - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - 0.50
................................................AAGTAGGCATTTCTGCAGTTGGCGCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................GGATTGAGTCTGAATGTACA............................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................ATAGTGTGTGTGGATGTGTGTatt.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 24 att 1.00 12.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................CGCTGTAGATCTGGCATTTGACAGGGCTGATATGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 36 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
............................................AAGGAAGTAGGCATTTCTGCAGTTGGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................ATAGTGTGTGTGGATGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAGAGAAGTCTGAAAAGGagtc........................ 26 agtc 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................TCCAGAAGGATTGAGTCTGAATGTA................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................ATTGTCACCTGCAGGAATTCTGG........................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.................................................................................................TGATATGATAGTGTGTGTGGATGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....GGATCTTCAGGCTGCAAACCGGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAGGTGTCCAGGCGAGTCAGT........... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................ATAGTGTGTGTGGATGTGTGTTt........................................................................................................................................................................................................................................................................................................................................................................................................................................... 23 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................TGCTGAATGGGACCAGCAGGATGGaac..................................................................................................................................................................................................................................................................................................................................................................... 27 aac 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCGAGTCAGTGCAGTAGAGGt 26 t 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................GAGTCTGTTCCAGAAGGcct.............................................................................................................................................................................................................................................................. 20 cct 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.TGAGGATCTTCAGGCTGCAAACCGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................AAGAACAGCTAGCTTGGAGAAGAGATG......................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TTAGATTTGAGACTCCTTGCAGAGCTTC......................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
....................................................................................................................................TGAAGAACAGCTAGCTTGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................ 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGTCTGAAAAGGTGTCCAGGCGAGTCt............. 31 t 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCGAGTCAGTGCAGTAGAGG. 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGAGAAGTCTGAAAAGGTGTCCAGG.................... 28 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................TCAAGAATTTGGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGAAGTCTGAAAAGGTGTCCAGGC................... 28 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.50 - -

Antisense strand
CTGAGGATCTTCAGGCTGCAAACCGGCTGATCAAGAATTTGGTCAAGGAAGTAGGCATTTCTGCAGTTGGCGCTGTAGATCTGGCATTTGACAGGGCTGATATGATAGTGTGTGTGGATGTGTGTTAAGGTGTGAAGAACAGCTAGCTTGGAGAAGAGATGTCCTCCTCATGCTGAATGGGACCAGCAGGATGGTGATTAGATTTGAGACTCCTTGCAGAGCTTCCCGGCTTCTTTTATCCATGGGACGAAGCTTTTGGTGTTAACAGAGTTAGGTTTGGGAGTCTGTTCCAGAAGGATTGAGTCTGAATGTACAGTTGAAGAGTCCCCAGGTCCAGAGACGATATTGTCACCTGCAGGAATTCTGGGCGAGCACCTCCGCTCACTTAAGTGTTCATGACTTCCTGAACTCCCAGCATGCACTGCCTTTCCCTTTCTGGTGTTTAGTTAGGAGTTACCCAGGCAACTCCTCTTACTTCTTCTGTCCATTTGGTTTCCCTCAAAGGAACAAGAGAAGTCTGAAAAGGTGTCCAGGCGAGTCAGTGCAGTAGAGGA
......................................................((((.((..((....(((((((..(((.(((..........))))))...))))))).))..)).))))...............................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51..............................................................................131.....................................................................................................................................................................................................................................................................................................................................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT2()
Testes Data. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTTCCCTCAAAccga................................................... 19 ccga 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
....................................................................................................................................................................................................................CTTGCAGAGCTTCCCGGCTTCTTTTA............................................................................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.GATCTTCAGGCTGCAAttgt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 ttgt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -