(6)
OTHER.mut
(1)
OVARY
(3)
PIWI.ip
(2)
PIWI.mut
(21)
TESTES

Sense strand
AGAGCCTTCTACTTCTGAAGTGAAACTGTGTGCTTTTGTTACATGGTCAGGTAAAGCATGACTGATGCCTGTCAATCACACTGGGTGGTACTGGGGCCTAGGGGGTTCCTGAACAGGCACAGTGCTTGTTGCAGAATCACGAGGACCAGAGCTGGCATCCTCAGAACCCGTGTAAAAGCCACATGGGCATAGTGGTCCCTCTGTACTCCAAGTACACTAGGTGGAGACACGGACTCCCAAGAGCAGGCTG
..................................................................................(((((.((((((..(((....((((.((((((((((.....))))))).)))))))...))).))))...)).)))))..........................................................................................
............................................................................77....................................................................................163.....................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
.................................................................................................................................TGCAGAATCACGAGGACCAGAGCTGGC.............................................................................................. 27 2 8.00 8.00 5.00 - 0.50 - 1.50 - - 0.50 - - - - 0.50 - - - - - - - - -
.................................................................................................................................TGCAGAATCACGAGGACCAGAGCTGG............................................................................................... 26 2 4.00 4.00 - - - 0.50 - - - - - 3.50 - - - - - - - - - - - -
................................................................................................................................TTGCAGAATCACGAGGACCAGAGCTG................................................................................................ 26 2 4.00 4.00 - - - - - - 0.50 - 0.50 1.50 - - - 1.50 - - - - - - - -
................................................................................................................................TTGCAGAATCACGAGGACCAGAGCTGGC.............................................................................................. 28 2 4.00 4.00 4.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TTGCAGAATCACGAGGACCAGAGCTGGCA............................................................................................. 29 2 3.50 3.50 3.50 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TGCAGAATCACGAGGACCAGAGCTGGCATC........................................................................................... 30 2 3.00 3.00 - - 0.50 - - - - - 1.00 - - - 1.00 - - - - 0.50 - - - -
..........................................................................................................................TGCTTGTTGCAGAATCACGAGGACCAGA.................................................................................................... 28 2 2.50 2.50 - - - - 2.00 - - - - - - - - 0.50 - - - - - - - -
..................................................................................................TAGGGGGTTCCTGAACAGGCACAGTGC............................................................................................................................. 27 2 2.00 2.00 - - - - - - - - 0.50 - - - 0.50 - 1.00 - - - - - - -
.................................................................................................................................TGCAGAATCACGAGGACCAGAGCTGGCAT............................................................................................ 29 2 2.00 2.00 - - 0.50 0.50 - - - - - - - - - - - - 0.50 - - - - 0.50
..............................................................................................................................TGTTGCAGAATCACGAGGACCAGAGC.................................................................................................. 26 2 1.50 1.50 - 0.50 - - - - - - 0.50 - - - - - 0.50 - - - - - - -
.................................................................................................................................TGCAGAATCACGAGGACCAGAGCTGGCA............................................................................................. 28 2 1.50 1.50 - 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - -
.................................................................................TGGGTGGTACTGGGGCCTAGGGGGTTCCTa........................................................................................................................................... 30 a 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
.........TACTTCTGAAGTGAAACTGTGTG.......................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - -
.............................................................................................................................................................................AAAAGCCACATGGGCATAGTGGTCCCact................................................ 29 act 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
................................................................................................................................TTGCAGAATCACGAGGACCAGAGCT................................................................................................. 25 2 1.00 1.00 - 0.50 - - 0.50 - - - - - - - - - - - - - - - - -
..............................................................TGATGCCTGTCAATCACACTGGGTGGT................................................................................................................................................................. 27 2 0.50 0.50 - - - - - - 0.50 - - - - - - - - - - - - - - -
..........................................................................................................................TGCTTGTTGCAGAATCACGAGGACCAGAGC.................................................................................................. 30 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - -
................................................................................................................................TTGCAGAATCACGAGGACCAGAGCTt................................................................................................ 26 t 0.50 1.00 - - - - - - - - - - - 0.50 - - - - - - - - - -
...........................................................................TCACACTGGGTGGTACTGGGGCCTAa..................................................................................................................................................... 26 a 0.50 0.50 - - - - - - - - - - - 0.50 - - - - - - - - - -
.....................................................AAGCATGACTGATGCCTGTCAATCACAC......................................................................................................................................................................... 28 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TGGCATCCTCAGAACCCGTGTAAAAGCC...................................................................... 28 2 0.50 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - -
........................................................................................................................................................TGGCATCCTCAGAACCCGTGTAAAAGC....................................................................... 27 2 0.50 0.50 - - - - - - - - - - - 0.50 - - - - - - - - - -
.................................................................................................................................TGCAGAATCACGAGGACCAGAGCTG................................................................................................ 25 2 0.50 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - -
...........................................TGGTCAGGTAAAGCATGACTGATGCCTGT.................................................................................................................................................................................. 29 2 0.50 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - -
..........................................................................................................................TGCTTGTTGCAGAATCACGAGGACC....................................................................................................... 25 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................AGAATCACGAGGACCAGAGCTGGCAT............................................................................................ 26 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................TGCAGAATCACGAGGACCAGAGCTGGCAa............................................................................................ 29 a 0.50 1.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................TTGTTGCAGAATCACGAGGACCAGA.................................................................................................... 25 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TCACGAGGACCAGAGCTGGCAT............................................................................................ 22 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
............................................................ACTGATGCCTGTCAATCACACTGGGT.................................................................................................................................................................... 26 2 0.50 0.50 - - - - - - 0.50 - - - - - - - - - - - - - - -
.......................................................................TCAATCACACTGGGTGGTACTGGGGC......................................................................................................................................................... 26 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TCCTCAGAACCCGTGTAAAAGCCACATGG................................................................ 29 2 0.50 0.50 - - - - - - 0.50 - - - - - - - - - - - - - - -
..........................................................................................................................TGCTTGTTGCAGAATCACGAGGACCAGAa................................................................................................... 29 a 0.50 2.50 - - - - - - - - - - - - - - - - 0.50 - - - - -
................................................................................................................................TTGCAGAATCACGAGGACCAGA.................................................................................................... 22 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
...........................................................................................TGGGGCCTAGGGGGTTCCTGAACAGG..................................................................................................................................... 26 2 0.50 0.50 - - - - - - - - - - - - - - 0.50 - - - - - - -
................................................................................................................................TTGCAGAATCACGAGGACCAGAGCTGG............................................................................................... 27 2 0.50 0.50 - - - - - - - - - - - - - - - - 0.50 - - - - -
..........................................................................................................................TGCTTGTTGCAGAATCACGAGGACCAGAG................................................................................................... 29 2 0.50 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - -
...........................................................................TCACACTGGGTGGTACTGGGGCCTA...................................................................................................................................................... 25 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................TGTAAAAGCCACATGGGCATAGTGGTC..................................................... 27 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - -
.................................................................................TGGGTGGTACTGGGGCCTAGGGGGT................................................................................................................................................ 25 2 0.50 0.50 - - - - - - 0.50 - - - - - - - - - - - - - - -
................................................................................................................................................................TCAGAACCCGTGTAAAAGCCACATGGGC.............................................................. 28 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - -
.......................................................GCATGACTGATGCCTGTCAATCACACT........................................................................................................................................................................ 27 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................TGCTTGTTGCAGAATCACGAGGACCA...................................................................................................... 26 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - -
......................................................................GTCAATCACACTGGGTGGTACTGGGGC......................................................................................................................................................... 27 2 0.50 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - -
..................................................................................................TAGGGGGTTCCTGAACAGGC.................................................................................................................................... 20 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
..........................................................TGACTGATGCCTGTCAATCACACTGG...................................................................................................................................................................... 26 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - -
................................................................................................................................TTGCAGAATCACGAGGACCAGAGCTGGaata........................................................................................... 31 aata 0.50 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - -
...................................................................................................................................CAGAATCACGAGGACCAGAGCTGGC.............................................................................................. 25 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - -

Antisense strand
AGAGCCTTCTACTTCTGAAGTGAAACTGTGTGCTTTTGTTACATGGTCAGGTAAAGCATGACTGATGCCTGTCAATCACACTGGGTGGTACTGGGGCCTAGGGGGTTCCTGAACAGGCACAGTGCTTGTTGCAGAATCACGAGGACCAGAGCTGGCATCCTCAGAACCCGTGTAAAAGCCACATGGGCATAGTGGTCCCTCTGTACTCCAAGTACACTAGGTGGAGACACGGACTCCCAAGAGCAGGCTG
..................................................................................(((((.((((((..(((....((((.((((((((((.....))))))).)))))))...))).))))...)).)))))..........................................................................................
............................................................................77....................................................................................163.....................................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
mjTestesWT2()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
....................................................................................................................................................GAGCTGGCATCCTCAGAACCCGTGTAA........................................................................... 27 2 5.50 5.50 - - 0.50 - - 1.00 - 1.00 - - 1.50 0.50 1.00 - - - - - - - - -
......................................................................................................................................................GCTGGCATCCTCAGAACCCGTGTAA........................................................................... 25 2 3.50 3.50 - 0.50 - - 0.50 - 2.00 - 0.50 - - - - - - - - - - - - -
.....................................................................................................................................................AGCTGGCATCCTCAGAACCCGTGTAA........................................................................... 26 2 2.50 2.50 - - - - - - - 1.50 - - - 1.00 - - - - - - - - - -
.........................................................................................................................GTGCTTGTTGCAGAATCACGAGGACCA...................................................................................................... 27 2 1.50 1.50 - - 0.50 0.50 - - - - - - - - - - - 0.50 - - - - - -
............................................................................................................................................................ATCCTCAGAACCCGTGTAAAAGCCACA................................................................... 27 2 1.50 1.50 - - 0.50 0.50 - - - - - - - - - - - - - - 0.50 - - -
.......................................................................................................................CAGTGCTTGTTGCAGAATCACGAGGACCA...................................................................................................... 29 2 1.00 1.00 - - 0.50 0.50 - - - - - - - - - - - - - - - - - -
..................................................................................................................AGGCACAGTGCTTGTTGCAGAATCACGA............................................................................................................ 28 2 1.00 1.00 - - 0.50 0.50 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................TGGCATCCTCAGAACCCGTGTAAcc........................................................................... 25 cc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
....................................................................................................................................................GAGCTGGCATCCTCAGAACCCGTGTA............................................................................ 26 2 1.00 1.00 - - - 0.50 - - - - - - 0.50 - - - - - - - - - - -
..................................................................................................................................................AGAGCTGGCATCCTCAGAACCCGTGTAAt........................................................................... 29 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - -
...................................................................................................................................................AGAGCTGGCATCCTCAGAACCCGTGTA............................................................................ 27 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - -
.......................................................................................GTACTGGGGCCTAGGGGGTTCCTGAACA....................................................................................................................................... 28 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - -
......................................................................................................................CAGTGCTTGTTGCAGAATCACGAGGACCAa...................................................................................................... 30 a 0.50 0.00 - 0.50 - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................CCTCAGAACCCGTGTAAAAGCCACA................................................................... 25 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................TGCTTGTTGCAGAATCACGAGGACCA...................................................................................................... 26 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - -
...................................................................................................................GGCACAGTGCTTGTTGCAGAATCACGA............................................................................................................ 27 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - -
..................................................................................................................................................CAGAGCTGGCATCCTCAGAACCCGTGTA............................................................................ 28 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
...................................................................................................................GGCACAGTGCTTGTTGCAGAATCACGAGGACCA...................................................................................................... 33 2 0.50 0.50 - - - - - - - - - - - - - - - - - - 0.50 - - -
........................................................................................................................AGTGCTTGTTGCAGAATCACGAGGACCA...................................................................................................... 28 2 0.50 0.50 - - - - - - - - - - - - - - - 0.50 - - - - - -
.................................................................................................................................................CCAGAGCTGGCATCCTCAGAACC.................................................................................. 23 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TCCTCAGAACCCGTGTAAAAGCCACA................................................................... 26 2 0.50 0.50 - - - - - - - - - - - - - - - 0.50 - - - - - -
....................................................................................................................GCACAGTGCTTGTTGCAGAATCACGA............................................................................................................ 26 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - -
...............................................................GATGCCTGTCAATCACACTGGGTGGTA................................................................................................................................................................ 27 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - 0.50 -
..............................................................................................................................................................................................AGTGGTCCCTCTGTACTCCAAGTACA.................................. 26 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................GCTGGCATCCTCAGAACCCGTGTAAAA......................................................................... 27 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - -
...........................................................................................................................GCTTGTTGCAGAATCACGAGGACCAGA.................................................................................................... 27 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................CATCCTCAGAACCCGTGTAAAAGCCA..................................................................... 26 2 0.50 0.50 - - - - - - - - - - - - - - - 0.50 - - - - - -
........................................................................................................................................................................................GGGCATAGTGGTCCCTCTGTACTCCAA....................................... 27 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................CATAGTGGTCCCTCTGTACTCCAAGTACA.................................. 29 2 0.50 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - -
............................................................................................................................................................................................ATAGTGGTCCCTCTGTACTCCAAGTACA.................................. 28 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................GAGCTGGCATCCTCAGAA.................................................................................... 18 4 0.50 0.50 - - - - - - 0.50 - - - - - - - - - - - - - - -