| Gene: Arfip2 | ID: uc009iyq.1_intron_0_0_chr7_112784908_r | SPECIES: mm9 |
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(4) OTHER.mut |
(6) PIWI.ip |
(3) PIWI.mut |
(23) TESTES |
| AGCTGCGGGGAGATGTGGCCATCAAGCTGAAGTTCCTGGAAGAAAACAAGGTGCTGCCCTACTCCCTTGGTCCTAAGTCACCTAAGTCCTAAGACACAGTACCTATCCCTTCAGACCCTTCTGATTGTTGGGTGCGGAGCTGCCCCTGGCTAGGGAGTGGGTTGTTCCCCTAGCCCCTTGAAACCTGAGCACTTTCAGTTCACCCTCCTCATCACTGGCTTCTAGTCCCAGTAGCATAACTGAAAAAAACATTGCCCCTTGGCTGGGGTTCCAGAACCCTAAACCCAGCAGATTAAGTCAGGTTTCTTTCTTCATATTGCCCCTTCTCTTTTGACTTCTTGAAAACTCCCTACCCCAAAACACTGTCAGCAGAGTCTATTTGCTCTGGACTGTGTCTGGGCTTAGGCTTGTAGCCCCTCCCTGAGGGTGCCTGAGTCTAGCCTTAGCTGACCCTGCTGGGCCCCCAGATCAAGGTGATGCACAAGCAGCTGCTGCTCTTCCACAATGCCGTGTCTGC .............................................................................................................................................................................................................................................................(((....))).((((((....))))))......(((((((.......(((...............)))....((((.(((((.............................))))).))))...)))))))..................................................................................................................................... ......................................................................................................................................................................................................................................................247.......................................................................................................................................385.................................................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................................................................................................TTGCCCCTTGGCTGGGGTTCCAGAACCCTAAACCCAGCAGATTAAGTCAGGT...................................................................................................................................................................................................................... | 52 | 1 | 14.00 | 14.00 | 14.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TCAAGCTGAAGTTCCTGGAAGAAAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 7.00 | 7.00 | - | 3.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TCAAGCTGAAGTTCCTGGAAGAAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 5.00 | 5.00 | - | - | 2.00 | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................TAAGACACAGTACCTATCCCTTCAGAC................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................TGTCAGCAGAGTCTtgca........................................................................................................................................ | 18 | tgca | 3.00 | 0.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TGGCCATCAAGCTGAAGTTCCTGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............GTGGCCATCAAGCTGAAGTTCCTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 3.00 | 3.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................TGCTCTGGACTGTGTCTGGGCTTAGGCTa............................................................................................................ | 29 | a | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................TAAGACACAGTACCTATCCCTTCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................CAAGCTGAAGTTCCTGGAAGAAAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................CAAGCTGAAGTTCCTGGAAGAAAACAAGa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 29 | a | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TCAAGCTGAAGTTCCTGGAAGAAAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - |
| .........................................................................................................................TGATTGTTGGGTGCGGAGCTGCCCCT.................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................AGCTGAAGTTCCTGGAAGAAAACAAGa.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | a | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................CCATCAAGCTGAAGTTCCTGGAAGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................TATTTGCTCTGGACTGTGTCTGGGCTT.................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................CAGAACCCTAAACCCAGCAGATTAAGTC.......................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TGATTGTTGGGTGCacgc.......................................................................................................................................................................................................................................................................................................................................................................................... | 18 | acgc | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................TCTGATTGTTGGGTGCGGAGCTGCCCCT.................................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................TGCTCTGGACTGTGTCTGGGCTTAGGCT............................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................TGGAAGAAAACAAGGTGCTGa............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 21 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................TCTGGACTGTGTCTGGGCTTAGGCTT............................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TGAAGTTCCTGGAAGAAAACAAGatc................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | atc | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TTCTGATTGTTGGGTGCGGAGCTGC...................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................TTTGCTCTGGACTGTGTCTGG...................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................TGCTCTGGACTGTGTCTGGGCTTAGGCTT............................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTGGACTGTGTCTGGGCTTAGGCT............................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................ATCAAGCTGAAGTTCCTGGAAGAAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................CCATCAAGCTGAAGTTCCTGGAAGAAAACt..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGACTGTGTCTGGGCTTAGGCTTG........................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TGAAGTTCCTGGAAGAAAACAAGatca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | atca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............GTGGCCATCAAGCTGAAGTTCCTGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TCCTGGAAGAAAACAAGGTGCTGCCCTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................TGGACTGTGTCTGGGCTTAGGCTTGTAG........................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................AGCTGAAGTTCCTGGAAGAAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TGTGGCCATCAAGCTGAAGTTCCTGa.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................TGAAGTTCCTGGAAGAAAACAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGGTGCCTGAGTCTAGCCTTAGC...................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TCAAGCTGAAGTTCCTGGAAGAAAACAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................CTGAAGTTCCTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 16 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 |
| AGCTGCGGGGAGATGTGGCCATCAAGCTGAAGTTCCTGGAAGAAAACAAGGTGCTGCCCTACTCCCTTGGTCCTAAGTCACCTAAGTCCTAAGACACAGTACCTATCCCTTCAGACCCTTCTGATTGTTGGGTGCGGAGCTGCCCCTGGCTAGGGAGTGGGTTGTTCCCCTAGCCCCTTGAAACCTGAGCACTTTCAGTTCACCCTCCTCATCACTGGCTTCTAGTCCCAGTAGCATAACTGAAAAAAACATTGCCCCTTGGCTGGGGTTCCAGAACCCTAAACCCAGCAGATTAAGTCAGGTTTCTTTCTTCATATTGCCCCTTCTCTTTTGACTTCTTGAAAACTCCCTACCCCAAAACACTGTCAGCAGAGTCTATTTGCTCTGGACTGTGTCTGGGCTTAGGCTTGTAGCCCCTCCCTGAGGGTGCCTGAGTCTAGCCTTAGCTGACCCTGCTGGGCCCCCAGATCAAGGTGATGCACAAGCAGCTGCTGCTCTTCCACAATGCCGTGTCTGC .............................................................................................................................................................................................................................................................(((....))).((((((....))))))......(((((((.......(((...............)))....((((.(((((.............................))))).))))...)))))))..................................................................................................................................... ......................................................................................................................................................................................................................................................247.......................................................................................................................................385.................................................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACAATGCCGTG..... | 15 | 2 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACAATGCCGTGa..... | 16 | a | 0.50 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |