| Gene: Art5 | ID: uc009iqs.1_intron_4_0_chr7_109248456_r.5p | SPECIES: mm9 |
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(4) OTHER.mut |
(2) PIWI.ip |
(3) PIWI.mut |
(21) TESTES |
| CCGAGTACTTGCTGATGAAGGAAGTAAAATCTACAAACACCCAGCTTCAGGTAGACCTGCAGATGCTCATGGGTAACTGGGCTGGGATGGAGAGACTGGCGTCCATGTGTTCCCTTTTGAGTCAGGTTCTGTCACTCTGAAGGCAGATATGTCAATCACCTCTTTGGGCAGGGTGATTTTTCTGCCCTCCACTGCCAGAGGTTTTATAGCAGCCTGAGCATTGGGAGCAGTGAAGCTCAGGTCTCACAGC ...............................................((((....))))(((.((((....)))).)))....((((......(((....))).......))))........................................................................................................................................ ..............................................47....................................................................117................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR051940(GSM545784) 18-32 nt total small RNAs (Mov10l+/-). (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................TGGAGAGACTGGCGTCCATGTGTTCC......................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TGAGTCAGGTTCTGTCACTCTGAAGGC.......................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................TGGGTAACTGGGCTGGGATGGAGAG............................................................................................................................................................ | 25 | 1 | 3.00 | 3.00 | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TCAGGTTCTGTCACTCTGAAGGCAGATA..................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAGACCTGCAGATGCTCATGGGTAACT............................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................................TCATGGGTAACTGGGCTGa..................................................................................................................................................................... | 19 | a | 2.00 | 0.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............TGATGAAGGAAGTAAAATCTACAAACACC................................................................................................................................................................................................................. | 29 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................TGCAGATGCTCATGGGTAACTGGGC........................................................................................................................................................................ | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TGAGTCAGGTTCTGTCACTCTGAAGGCAt........................................................................................................ | 29 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ................................................................GCTCATGGGTAACTGGGCTGGGATGG................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................TGTCACTCTGAAGGCAGATATGTCAATCAC........................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...................................................................................................................TTTGAGTCAGGTTCTGTCACTCTGAAG............................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........TGCTGATGAAGGAAGTAAAATCTACA....................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAGACCTGCAGATGCTCATGGGTAAC............................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................TCTGTCACTCTGAAGGta......................................................................................................... | 18 | ta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................................................................AGTCAGGTTCTGTCACTCTGAAGGCA......................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TAGCAGCCTGAGCATTGGGAGCAGTGA................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .........................................................................TAACTGGGCTGGGATGGAGAGACTGG....................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TAGCAGCCTGAGCATTGGGAGCAGTG.................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TTCTGTCACTCTGAAGGCAGATATGTC................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................TCTGTCACTCTGAAGGCAGATATGTCA................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................TGCAGATGCTCATGGGTAACTGGGCTG...................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............TGAAGGAAGTAAAATCTACAAACACCCA............................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAGACCTGCAGATGCTCATGGGTAACTGG.......................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ........TTGCTGATGAAGGAAGTAAAATCTACA....................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .............................................TTCAGGTAGACCTGCAGATGC........................................................................................................................................................................................ | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................................................................................TGTCACTCTGAAGGCAGATATGTCAAT.............................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAGACCTGCAGATGCTCATGG.................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................TCCATGTGTTCCCTTTTGAGTCAGGTT.......................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| CCGAGTACTTGCTGATGAAGGAAGTAAAATCTACAAACACCCAGCTTCAGGTAGACCTGCAGATGCTCATGGGTAACTGGGCTGGGATGGAGAGACTGGCGTCCATGTGTTCCCTTTTGAGTCAGGTTCTGTCACTCTGAAGGCAGATATGTCAATCACCTCTTTGGGCAGGGTGATTTTTCTGCCCTCCACTGCCAGAGGTTTTATAGCAGCCTGAGCATTGGGAGCAGTGAAGCTCAGGTCTCACAGC ...............................................((((....))))(((.((((....)))).)))....((((......(((....))).......))))........................................................................................................................................ ..............................................47....................................................................117................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR051940(GSM545784) 18-32 nt total small RNAs (Mov10l+/-). (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................GCGTCCATGTGTTCCCTTTTGAGTCA.............................................................................................................................. | 26 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................CAGCTTCAGGTAGACCTGCAGATGCTCA..................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................CCTTTTGAGTCAGGTTCTGTCACTCT................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |