| Gene: Vps33b | ID: uc009iab.1_intron_10_0_chr7_87429502_f | SPECIES: mm9 |
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(5) OTHER.mut |
(1) PIWI.ip |
(1) PIWI.mut |
(20) TESTES |
| TCACATCCTCTGACAAGAGCCTGAAGGTGCTACTCAACGCTGAGGACAAGGTGAGGGTGTGGGTGTGTCCGGATTTACTCAGGACCGCTGCACAAAGGCTGGGGTCCAGCCCTGGGCAGGAGGCCAAACCCCTGGGAGGTTCCCCCATCGATTAGGGTCAGACCCAAGCTAGGAATGGTGGCTCCCACCTGTAATTTTATCTTTTCAAAGATGGAAGCAGATGAATCAAGAGCTTAAGACCAGGCTCAGCTAAATAAAACTATCTCAGAATCCAAAAATACATATGTGAAAGAATAGATCCAGGCCCTCGAGGTGGTCCTGACACCCACTTCTGACACCAGCTCTGCTCTGGTCTTAGTTTGGCTTGGGCATCACTTCCTGGGCTCATGAGGCAGGCAGGGGCCTGGTACAGAGCTGTCATAGTAAGTGGCTTCTGTCTTGTTCTCTCACAGGTGTTCAGTGAGATCCGCAATGAGCACTTCTCCAATGTCTTTGGCTTCTT ........................................................................................................................................................................................................................................................................................................................................................................(((((..((........))..))).)).(((((((((((..(((...(((............)))...)))..)))))).)).)))........................................................ ................................................................................................................................................................................................................................................................................................................................................................353................................................................................................452................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR051940(GSM545784) 18-32 nt total small RNAs (Mov10l+/-). (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................................................................................................................................................CCCACTTCTGACACCA.................................................................................................................................................................. | 16 | 5 | 184.80 | 184.80 | 79.80 | 9.00 | 33.00 | - | 20.40 | 1.60 | 19.60 | 3.00 | 0.60 | 4.80 | 5.00 | 7.40 | 0.60 | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................CCACTTCTGACACCA.................................................................................................................................................................. | 15 | 11 | 25.27 | 25.27 | 9.73 | 0.55 | 1.45 | - | 3.27 | 1.09 | 1.00 | 1.00 | 0.09 | 0.36 | 0.64 | 0.64 | 5.45 | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCACTTCTGACACC................................................................................................................................................................... | 15 | 10 | 3.20 | 3.20 | 1.30 | 0.30 | 0.40 | - | 0.50 | 0.10 | 0.40 | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................CCACTTCTGACACCAGggac............................................................................................................................................................. | 20 | ggac | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................ACCCACTTCTGACACCA.................................................................................................................................................................. | 17 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........TCTGACAAGAGCCTGAAGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| .....................TGAAGGTGCTACTCAACGCTGAGGACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ......CCTCTGACAAGAGCCTGAAGGTGCTACTt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCACTTCTGACACga.................................................................................................................................................................. | 16 | ga | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................CTGAGGACAAGGTGAGGGTGTGGGa...................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | a | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............ACAAGAGCCTGAAGGTGCTACTCAACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCACTTCTGACACCAca................................................................................................................................................................ | 18 | ca | 1.00 | 184.80 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....TCCTCTGACAAGAGCCTGAAGGTGCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ............ACAAGAGCCTGAAGGTGCTACTCAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCACTTCTGACACCg.................................................................................................................................................................. | 16 | g | 0.20 | 3.20 | 0.10 | - | - | - | - | - | - | - | - | - | - | 0.10 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCACTTCTGACACCAttt............................................................................................................................................................... | 19 | ttt | 0.20 | 184.80 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCACTTCTGACACCAtttt.............................................................................................................................................................. | 20 | tttt | 0.20 | 184.80 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCACTTCTGACACCAcaa............................................................................................................................................................... | 19 | caa | 0.20 | 184.80 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCACTTCTGACACCAt................................................................................................................................................................. | 17 | t | 0.20 | 184.80 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 | - | - |
| .....................................................................................................................................................................................................................................................................................................................................CCACTTCTGACACCAagga.............................................................................................................................................................. | 19 | agga | 0.09 | 25.27 | - | 0.09 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TCACATCCTCTGACAAGAGCCTGAAGGTGCTACTCAACGCTGAGGACAAGGTGAGGGTGTGGGTGTGTCCGGATTTACTCAGGACCGCTGCACAAAGGCTGGGGTCCAGCCCTGGGCAGGAGGCCAAACCCCTGGGAGGTTCCCCCATCGATTAGGGTCAGACCCAAGCTAGGAATGGTGGCTCCCACCTGTAATTTTATCTTTTCAAAGATGGAAGCAGATGAATCAAGAGCTTAAGACCAGGCTCAGCTAAATAAAACTATCTCAGAATCCAAAAATACATATGTGAAAGAATAGATCCAGGCCCTCGAGGTGGTCCTGACACCCACTTCTGACACCAGCTCTGCTCTGGTCTTAGTTTGGCTTGGGCATCACTTCCTGGGCTCATGAGGCAGGCAGGGGCCTGGTACAGAGCTGTCATAGTAAGTGGCTTCTGTCTTGTTCTCTCACAGGTGTTCAGTGAGATCCGCAATGAGCACTTCTCCAATGTCTTTGGCTTCTT ........................................................................................................................................................................................................................................................................................................................................................................(((((..((........))..))).)).(((((((((((..(((...(((............)))...)))..)))))).)).)))........................................................ ................................................................................................................................................................................................................................................................................................................................................................353................................................................................................452................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR051940(GSM545784) 18-32 nt total small RNAs (Mov10l+/-). (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTGAGATCCGgt................................. | 17 | gt | 142.00 | 0.00 | - | 65.00 | - | 28.00 | - | 18.00 | - | 13.00 | 12.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTGAGATCCGCgt................................ | 18 | gt | 18.00 | 0.00 | - | 8.00 | - | - | - | 3.00 | - | 3.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGTGAGATCCGga................................. | 17 | ga | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................TGACACCAGCTCTGCtatt........................................................................................................................................................... | 19 | tatt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCAGTGAGATCCGgt................................. | 18 | gt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCACTTCTCCAaga................ | 18 | aga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CTTCTGACACCAGCgttt................................................................................................................................................................ | 18 | gttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCACTTCTCCAcctg................ | 19 | cctg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |