| Gene: Myd116 | ID: uc009gvu.1_intron_1_0_chr7_52780762_r.3p | SPECIES: mm9 |
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(4) OTHER.mut |
(2) OVARY |
(2) PIWI.ip |
(1) PIWI.mut |
(14) TESTES |
| GGGCTCTTGGTTCTAAGGATGTAGAGCTTGGGTGTTGAGAGAGATTAACCAAGTGGCAGAGTTGGGTGTGAGCAATGTTATTTGGAATTCGAGGCAGGCATTCACGTGTTGCTGCTGTGACTATTTGTTACCATGACTCAGTGCTGTGACCCGAGACTGTTTCCCAGAGCGACTTCTAAACAAATTTCCCCCCTTTCTAGCCCAGACACATGGCCCCGAGCCCAAGACCCCAGCATGTCCTGCACTGGAG ......................................................................((((..(((((...........(((((((((....))))..)))))(((((.....))))).)))))....))))......................................................................................................... ......................................................................71.......................................................................................160........................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR037897(GSM510433) ovary_rep2. (ovary) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................TGTTATTTGGAATTCGAGGCAGGCAT..................................................................................................................................................... | 26 | 1 | 7.00 | 7.00 | 3.00 | - | 1.00 | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - |
| .............TAAGGATGTAGAGCTTGGGTGTTGA.................................................................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................TGAGCAATGTTATTTGGAATTCGAGGC........................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | - | - | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - |
| ...........................................................................TGTTATTTGGAATTCGAGGCAGGCA...................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...........................................................................TGTTATTTGGAATTCGAGGCAGGCATT.................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ................................................................................................................................TACCATGACTCAGTGCTGTGACCCGAGA.............................................................................................. | 28 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................TGTTATTTGGAATTCGAGGCAGGC....................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................................................................................................TGCTGTGACCCGAGACTGTTTCCCAGA.................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................GTTATTTGGAATTCGAGGCAGGC....................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................TTTCTAGCCCAGACACATGGCCCCGAGC............................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..............................................................................................................................................................................................................CACATGGCCCCGAGCCCAAGACCCCAGC................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TAAGGATGTAGAGCTTGGGTGTTaaa................................................................................................................................................................................................................... | 26 | aaa | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................ATGTTATTTGGAATTCGAGGCAGGCA...................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................CCCAGACACATGGCCCCGAGCCCAAGA....................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................TGGCAGAGTTGGGTGTGAGCAATGTT........................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................TGTTTCCCAGAGCGACTTCTAAACAAATT................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................CTGTGACCCGAGACTGTTTCCCAGAGCGACT............................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .............TAAGGATGTAGAGCTTGGGTGTTGAG................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........TCTAAGGATGTAGAGCTTGGGTGTT...................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .....................................................................................................................................TGACTCAGTGCTGTGACCCGAGA.............................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................CCGAGACTGTTTCCCAGAGCGACTT........................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................TGAGAGAGATTAACCAAGTGGCAGAGTT........................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................GTAGAGCTTGGGTGTTGAGAG................................................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .............TAAGGATGTAGAGCTTGGGTGTTGAGA.................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| GGGCTCTTGGTTCTAAGGATGTAGAGCTTGGGTGTTGAGAGAGATTAACCAAGTGGCAGAGTTGGGTGTGAGCAATGTTATTTGGAATTCGAGGCAGGCATTCACGTGTTGCTGCTGTGACTATTTGTTACCATGACTCAGTGCTGTGACCCGAGACTGTTTCCCAGAGCGACTTCTAAACAAATTTCCCCCCTTTCTAGCCCAGACACATGGCCCCGAGCCCAAGACCCCAGCATGTCCTGCACTGGAG ......................................................................((((..(((((...........(((((((((....))))..)))))(((((.....))))).)))))....))))......................................................................................................... ......................................................................71.......................................................................................160........................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR037897(GSM510433) ovary_rep2. (ovary) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................TCAGTGCTGTGACCCGAGACTGTT......................................................................................... | 24 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................TTCTAAACAAATTTCCCagaa............................................................ | 21 | agaa | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................CAAATTTCCCCCCTTTgt...................................................... | 18 | gt | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................AGAGAGATTAACCAAGTGGCAGAG............................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..GCTCTTGGTTCTAAGGAT...................................................................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |