| Gene: Nucb1 | ID: uc009gvn.1_intron_1_0_chr7_52749584_r | SPECIES: mm9 |
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(5) OTHER.mut |
(1) OVARY |
(5) PIWI.ip |
(3) PIWI.mut |
(1) TDRD1.ip |
(29) TESTES |
| TGGGGCGCTCCCAGGACCGCCTGGAGGCACAGAAGAGAGAGCTGCAGCAGGTGACCAGTGGGGGAATTCGGGCCCATTCTCTGGTTCTCTTAGGACCCTTTTCTTTATCCAAATGGGTATCTTCAGGGTGGGATGGCCTGTAGCTGCCATGTTAGGAATCTTAGATACATACATGCAGGTGATAGCTGCCGTCATTAAAGGGGCAGAGGATTTTCCATGCCTGACTGTGCATGGCAGCCATTTTACATGAGGCAGTGAGGGGAGCCTAGAGTTCAGTGTGGGAGCACCTGAGCCACGACAGGAGACAATGGAATCCTAACTAGTGTGGATCCCAGCTCAGTGACGAGGAGCCAAGGCCATGGGGAAGAAAAGGGACTGTGGCCCCTTAGCAGTTGGCTATAGATAGCATCTTCCTGGGGCCATAACCTCCTGACTGTGCATCTGCCTCCTGCAGGCTGTTCTGCAGATGGAGCAGAGGAAGCAGCAACTGCAAGAACAGAGCGC ..................................................................................................................................................................................................................................................................................................................................................................((((((((.............)))))))).....((((..(((...((((.((((..((..((((......))))..))..)))))))))))..)))).................................................... ..................................................................................................................................................................................................................................................................................................................................................................355................................................................................................454................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR051941(GSM545785) 18-32 nt total small RNAs (Mov10l-/-). (mov10L testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesWT3() Testes Data. (testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037897(GSM510433) ovary_rep2. (ovary) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCTATAGATAGCATCTTCCT......................................................................................... | 28 | 1 | 16.00 | 16.00 | 4.00 | - | 3.00 | 4.00 | - | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTGACTGTGCATCTGCCTCCTG..................................................... | 27 | 1 | 9.00 | 9.00 | - | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........CAGGACCGCCTGGAGGCACAGAAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 7.00 | 7.00 | - | - | - | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCTATAGATAGCATCTTCC.......................................................................................... | 27 | 1 | 5.00 | 5.00 | 1.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGTTGGCTATAGATAGCATCTTCCT......................................................................................... | 29 | 1 | 5.00 | 5.00 | 1.00 | - | 1.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGTTGGCTATAGATAGCATCTTCC.......................................................................................... | 28 | 1 | 5.00 | 5.00 | - | - | - | - | - | 1.00 | 1.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGTTGGCTATAGATAGCATCTTC........................................................................................... | 27 | 1 | 4.00 | 4.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCTATAGATAGCATCTTCCTG........................................................................................ | 29 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCTATAGATAGCATCTTC........................................................................................... | 26 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................GGAGGCACAGAAGAGAGAGCTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCTATAGATAGCAT............................................................................................... | 22 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................TTAGCAGTTGGCTATAGATAGCATCTTCCT......................................................................................... | 30 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................CCTTAGCAGTTGGCTATAGATAGCA................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................GGTGGGATGGCCTGTgcc........................................................................................................................................................................................................................................................................................................................................................................ | 18 | gcc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGGCTATAGATAGCATCTTCCTG........................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................GGGGCAGAGGATTTggcg............................................................................................................................................................................................................................................................................................... | 18 | ggcg | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGCAGCAACTGCAAGAACAGAGC.. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATGGAGCAGAGGAAGCAGta.................. | 27 | ta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................GGGGGAATTCGGaaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................. | 16 | aaaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGAAGCAGCAACTGCAAGAACAG..... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................GGGGCAGAGGATTTggca............................................................................................................................................................................................................................................................................................... | 18 | ggca | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................CCTGGAGGCACAGAAGAGAGAGCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCTATAGATAGCATCTTCtt......................................................................................... | 28 | tt | 1.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCTATAGATAGCATt.............................................................................................. | 23 | t | 1.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGATGGAGCAGAGGAAGCAGCAACT............... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGTTGGCTATAGATAGCATCTTCCTG........................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCTATAGATAGCATCTTCCTa........................................................................................ | 29 | a | 1.00 | 16.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCTGTTCTGCAGATG................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................GTGGGAGCACCTGAGCCACGACAGGAGACAAT................................................................................................................................................................................................... | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGATGGAGCAGAGGAAGCAGCAAC................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTTGGCTATAGATAGCATCTT............................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGCAGCAACTGCAAGAACAGAGC.. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGTTGGCTATAGATAGCATC.............................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTGCAGATGGAGCAGAGGAAGCA..................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................................AAGAGAGAGCTGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 16 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................AAGAAAAGGGACTGT............................................................................................................................. | 15 | 16 | 0.06 | 0.06 | - | - | - | - | - | - | - | - | 0.06 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGGGGCGCTCCCAGGACCGCCTGGAGGCACAGAAGAGAGAGCTGCAGCAGGTGACCAGTGGGGGAATTCGGGCCCATTCTCTGGTTCTCTTAGGACCCTTTTCTTTATCCAAATGGGTATCTTCAGGGTGGGATGGCCTGTAGCTGCCATGTTAGGAATCTTAGATACATACATGCAGGTGATAGCTGCCGTCATTAAAGGGGCAGAGGATTTTCCATGCCTGACTGTGCATGGCAGCCATTTTACATGAGGCAGTGAGGGGAGCCTAGAGTTCAGTGTGGGAGCACCTGAGCCACGACAGGAGACAATGGAATCCTAACTAGTGTGGATCCCAGCTCAGTGACGAGGAGCCAAGGCCATGGGGAAGAAAAGGGACTGTGGCCCCTTAGCAGTTGGCTATAGATAGCATCTTCCTGGGGCCATAACCTCCTGACTGTGCATCTGCCTCCTGCAGGCTGTTCTGCAGATGGAGCAGAGGAAGCAGCAACTGCAAGAACAGAGCGC ..................................................................................................................................................................................................................................................................................................................................................................((((((((.............)))))))).....((((..(((...((((.((((..((..((((......))))..))..)))))))))))..)))).................................................... ..................................................................................................................................................................................................................................................................................................................................................................355................................................................................................454................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR051941(GSM545785) 18-32 nt total small RNAs (Mov10l-/-). (mov10L testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesWT3() Testes Data. (testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037897(GSM510433) ovary_rep2. (ovary) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT2() Testes Data. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................TGCCATGTTAGGAATCTTAGATACATA............................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..............................................................................................................................................GCTGCCATGTTAGGAATCTTAGATACATA............................................................................................................................................................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..............................................................................................................................................................................................GTCATTAAAGGGGCAGAGGATTTTCCA............................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................CTGCCATGTTAGGAATCTTAGATACATA............................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |