(5)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(2)
PIWI.mut
(24)
TESTES

Sense strand
GCAGGTACTTCAACGGGGGACCCCCTGCAGAGACGGACTTTGGGGGAGACGTGAGTGCGCGGCCGAGTCACGGGATGGAAGCCGGTAGACCCCTGTGTCTGAGGGAGGAAAGATGGGGTCCTTAGTCTTGGGTTTGAGAGAAGAAGGGCTCACAGCTTATTTCTAAAATGATCTGAAGTTGGGATGGCCTGTTCCTTGCCAAAGATCTCAGTTGTAAAGTTGTTCTGTCCTTTCTTCCCAGTATGGTGGAACCCAGTACAGCCTTGTGGTGTTCAACACCGTGGACTGCGC
....................................................................................................................................(((....)))...(((((..((((((...((......))....))))))....))))).....................................................................................................
.................................................................................................................................130.............................................................194...............................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
...................................................................................................................................................................TAAAATGATCTGAAGTTGGGATGGCCT..................................................................................................... 27 1 19.00 19.00 9.00 4.00 - 1.00 2.00 - - - 1.00 - 1.00 - - 1.00 - - - - - - - - - - -
...................................................................................................................................................................TAAAATGATCTGAAGTTGGGATGGCC...................................................................................................... 26 1 7.00 7.00 1.00 4.00 - - - - - - - - - - - - - - - 1.00 - - - 1.00 - - -
...................................................................................................................................................................TAAAATGATCTGAAGTTGGGATGGCCTG.................................................................................................... 28 1 7.00 7.00 3.00 - - 1.00 - - 2.00 - - 1.00 - - - - - - - - - - - - - - -
.........................TGCAGAGACGGACTTTGGGGGAGAC................................................................................................................................................................................................................................................. 25 1 6.00 6.00 2.00 1.00 - - 2.00 - - - - - - - - 1.00 - - - - - - - - - - -
...................................................................................................................................................................................................................................................TGGTGGAACCCAGTACAGCCTTGTGGT..................... 27 1 5.00 5.00 - 1.00 1.00 1.00 - - - - - - - - - - 1.00 1.00 - - - - - - - - -
...................................................................................................................................................................................................................................................TGGTGGAACCCAGTACAGCCTTGTGG...................... 26 1 3.00 3.00 - - - 1.00 - - - - 2.00 - - - - - - - - - - - - - - - -
........................................................................................................................................................................TGATCTGAAGTTGGGATGGCCTGTTC................................................................................................. 26 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGAGAGAAGAAGGGCTCACAGCTTATT.................................................................................................................................. 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................TAAAATGATCTGAAGTTGGGATGGC....................................................................................................... 25 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..........................................................................................................................TAGTCTTGGGTTTGAGAGAAGAAGG................................................................................................................................................ 25 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................TGCAGAGACGGACTTTGGGGGAGACa................................................................................................................................................................................................................................................ 26 a 2.00 6.00 - - - - - - - - - 2.00 - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................TATGGTGGAACCCAGTACAGCCTTGTGGT..................... 29 1 2.00 2.00 - - - - - - - - - - - - 1.00 - - - - - - - - - 1.00 - -
...................................................................................................................................................................................................TTGCCAAAGATCTCAGTTGTAAAGTTGT.................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
............ACGGGGGACCCCCTGCAGAGACGGAC............................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
........................CTGCAGAGACGGACTTTGGG....................................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........................TGCAGAGACGGACTTTGGGGGAGACtaa.............................................................................................................................................................................................................................................. 28 taa 1.00 6.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................TGGAAGCCGGTAGACCCCTGTGTCTa.............................................................................................................................................................................................. 26 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................GAGACGGACTTTGGGGGAGACGTGA............................................................................................................................................................................................................................................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................ACCCCCTGCAGAGACGGACTTTG......................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................TCTAAAATGATCTGAAGTTGGGATGGC....................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
............................................................................................................................GTCTTGGGTTTGAGAGAAGAAGGGCTC............................................................................................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................TATGGTGGAACCCAGTACAGCCTTGTG....................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........TTCAACGGGGGACCCCCTGCAGAGAC................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................TGCAGAGACGGACTTTGGGGGAGA.................................................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
................................................................................................................................................................................................................................................................TACAGCCTTGTGGTGTTCAACACCGTG........ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...............................................................................................................................................................TTTCTAAAATGATCTGAAGTTGGGATGGC....................................................................................................... 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................TGGTGGAACCCAGTACAGCCTTGTGGTGTT.................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
............................AGAGACGGACTTTGGGGGAGACGTGA............................................................................................................................................................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................GAGACGGACTTTGGGGGAGAC................................................................................................................................................................................................................................................. 21 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................AAAATGATCTGAAGTTGGGATGGCCT..................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................TGCCAAAGATCTCAGTTGTAAAGTT...................................................................... 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................................................................................TAGTCTTGGGTTTGAGAGAAGAAGGG............................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.........................TGCAGAGACGGACTTTGGGGGAGACt................................................................................................................................................................................................................................................ 26 t 1.00 6.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................TGGGATGGCCTGTTCCTTGCCAAAGATC.................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...........................................................................TGGAAGCCGGTAGACCCCTGTGTCTG.............................................................................................................................................................................................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................................................................TCACGGGATGGAAGCCGGTAGACCCC...................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................TGGGTTTGAGAGAAGAAGGGCTCACAGC....................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TGGAAGCCGGTAGACCCCTGTGTCTGAG............................................................................................................................................................................................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................TGCAGAGACGGACTTTGGGGGAGACGT............................................................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................AGTCACGGGATGGAAGCCGGTAGACCCCTt.................................................................................................................................................................................................... 30 t 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............CGGGGGACCCCCTGtcga.................................................................................................................................................................................................................................................................... 18 tcga 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00
........................................................................................................................................................................TGATCTGAAGTTGGGATGGCCTGTT.................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.......................................................................................................................................................................................................................................................................TTGTGGTGTTCAACACCGTGGACTGCGC 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TTGCCAAAGATCTCAGTTGTAAAGTTGTT................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.............................GAGACGGACTTTGGGGGAGACGTGAGT........................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................TAGTCTTGGGTTTGAGAGAAGAAGGGC.............................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.................................................................................................................................GGGTTTGAGAGAAGAAGGGCTCACAG........................................................................................................................................ 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................TTTCTTCCCAGTATGGTGGAACCCAGT.................................. 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -

Antisense strand
GCAGGTACTTCAACGGGGGACCCCCTGCAGAGACGGACTTTGGGGGAGACGTGAGTGCGCGGCCGAGTCACGGGATGGAAGCCGGTAGACCCCTGTGTCTGAGGGAGGAAAGATGGGGTCCTTAGTCTTGGGTTTGAGAGAAGAAGGGCTCACAGCTTATTTCTAAAATGATCTGAAGTTGGGATGGCCTGTTCCTTGCCAAAGATCTCAGTTGTAAAGTTGTTCTGTCCTTTCTTCCCAGTATGGTGGAACCCAGTACAGCCTTGTGGTGTTCAACACCGTGGACTGCGC
....................................................................................................................................(((....)))...(((((..((((((...((......))....))))))....))))).....................................................................................................
.................................................................................................................................130.............................................................194...............................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
............................................................................................................................................................................................................................................................CCAGTACAGCCTTGTGGTGTTCAACACCG.......... 29 1 3.00 3.00 - - - - - 3.00 - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................GGTGGAACCCAGTACAGCCTTGTGGTGTT.................. 29 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................ATGGCCTGTTCCTTGCCAAAGATCTCA................................................................................. 27 1 2.00 2.00 - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................TCCTTGCCAAAGATCTCAGTTGTAA.......................................................................... 25 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................GATGGCCTGTTCCTTGCCAAAGATCTCA................................................................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................CCAAAGATCTCAGTTGTAAAGTTG..................................................................... 24 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................................................................................................................GTTCCTTGCCAAAGATCTCAGTTGTAA.......................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................CCCAGTACAGCCTTGTGGT..................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..............................................................................................................................................................................................GTTCCTTGCCAAAGATCTCAGTTGTA........................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................CCAGTACAGCCTTGTGGT..................... 18 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................GCCTGTTCCTTGCCAAAGATCTCAGTTGTA........................................................................... 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................GGGATGGAAGCCGGTAGACCCCTGTG.................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.............................................................................................................................................................................................................................GTTCTGTCCTTTCTTCCCAGTATGGTGGAA........................................ 30 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................TGGCCTGTTCCTTGCCAAAGATCTCA................................................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................CCTGTTCCTTGCCAAAGATCTCAGTTGTA........................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.............................................................................................................................................................................................................................GTTCTGTCCTTTCTTCCCAGTATGGTG........................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................GTCACGGGATGGAAGCCGGT............................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -