| Gene: Tbc1d17 | ID: uc009grc.1_intron_6_0_chr7_52098482_r | SPECIES: mm9 |
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(3) OTHER.mut |
(7) PIWI.ip |
(18) TESTES |
| TGAGCAGGAGCGGAGGAACTCACTGCTGCATGGATACCGAAGCCTCATTGGTGGGTGGGGCCAGGAAACGTGGTGGAGTTGATATGGTGGGGTGAGCTGCAGTGCCTGGGAAGGTTGTCTTGGGGCCTTGTCAGCTCTCCCTGGGAGATTGGGTGGCCTTACCTCTCTGTGCCTCTGTTTCCCTAGGCATACTAGAGTCTCATGTTGTGGGTGGCGGTAATAGGTTGTGGGGAAGCTCCATCCTCACCCTAGCATGAGCCCAGCAGCTCAGGGCTGCCAGCATACAGGGAACTATCGCTGCTACCTCTGACTAGCTAGGAAGGCCTACCTACTGACCTTGTTCATGTTCCTGCCATGCTGGACTCCACAGAGAGAGATGTAAGCCGCACGGACAGGACTAACAAGTTCTATGAAGGCCCT ........................................................................................................................................................................................((((..........(((((((((.((((((.((.........((((((...)))))))))))))))))))))))((.(((((.((((((.((.((((....((....))...)))).)).)))))))).))).))...)))).............................................................................................. ........................................................................................................................................................................................185..............................................................................................................................................330........................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesWT2() Testes Data. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................................................................................................................................................................TGCTACCTCTGACTAGCTAGGAAGGCCT.............................................................................................. | 28 | 1 | 7.00 | 7.00 | 4.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................TGCTACCTCTGACTAGCTAGGAAGGCC............................................................................................... | 27 | 1 | 5.00 | 5.00 | 3.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................TCGCTGCTACCTCTGACTAGCTAGGAA................................................................................................... | 27 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................TACTAGAGTCTCATGTTGTGGGTGGC............................................................................................................................................................................................................. | 26 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................TGCCATGCTGGACTCCACAGAGAGAGATG......................................... | 29 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................TGACTAGCTAGGAAGGCCTACCTACT....................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................GATGTAAGCCGCACGGACAGGACTAAC.................. | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGCATGGATACCGAAGCCTCATTGagag.............................................................................................................................................................................................................................................................................................................................................................................. | 28 | agag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........CGGAGGAACTCACTGCTGCATGGAT................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TAATAGGTTGTGGGGAAGCTCCATCCTCACC............................................................................................................................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .........................................................................................................................................................................................GGCATACTAGAGTCTCATGTTGTGG.................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................TGCTGGACTCCACAGAGAGAGATGTA....................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................TATCGCTGCTACCTCTGACTAGCTAGGAA................................................................................................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TGCTGCATGGATACCGAAGCCTCA..................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................TGGACTCCACAGAGAGAGATGTAAGCCG.................................. | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................TCCACAGAGAGAGATGTAAGCCGCAC............................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................TGTCAGCTCTCCCTGGGAGATTGGGTGt........................................................................................................................................................................................................................................................................ | 28 | t | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................TGCTACCTCTGACTAGCTAGGAAGGC................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................TGCTACCTCTGACTAGCTAGGAAGGCa............................................................................................... | 27 | a | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................TGCTGGACTCCACAGAGAGAGATGTAAGCCGC................................. | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................CTCAGGGCTGCCAGCggc........................................................................................................................................ | 18 | ggc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..............GGAACTCACTGCTGCATGGATACCGAA........................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TAGGCATACTAGAGTCTCATGTTGTGG.................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TACCTCTCTGTGCCTCTGTTTCCCTAG.......................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................TGGGAGATTGGGTGGCCTTACCTCTC............................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................TACCTCTGACTAGCTAGGAAGGCCTACC........................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......GGAGCGGAGGAACTCACTGC.......................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ......................................................................................................................................................................................................................................................................................................................................................................TGGACTCCACAGAGAGAGATGTAAGCC................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................TAACAAGTTCTATGAAGGCCC. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ................................................................................................................................................................................................TAGAGTCTCATGTTGTGGGTGGggg........................................................................................................................................................................................................... | 25 | ggg | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................AGGCATACTAGAGTCTCATGTTGTGG.................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................AGAGAGATGTAAGCCGCACGGACAGGA....................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................TGTCAGCTCTCCCTGGGAGATTGGGTG......................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................ACCTCTGACTAGCTAGGA.................................................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - |
| TGAGCAGGAGCGGAGGAACTCACTGCTGCATGGATACCGAAGCCTCATTGGTGGGTGGGGCCAGGAAACGTGGTGGAGTTGATATGGTGGGGTGAGCTGCAGTGCCTGGGAAGGTTGTCTTGGGGCCTTGTCAGCTCTCCCTGGGAGATTGGGTGGCCTTACCTCTCTGTGCCTCTGTTTCCCTAGGCATACTAGAGTCTCATGTTGTGGGTGGCGGTAATAGGTTGTGGGGAAGCTCCATCCTCACCCTAGCATGAGCCCAGCAGCTCAGGGCTGCCAGCATACAGGGAACTATCGCTGCTACCTCTGACTAGCTAGGAAGGCCTACCTACTGACCTTGTTCATGTTCCTGCCATGCTGGACTCCACAGAGAGAGATGTAAGCCGCACGGACAGGACTAACAAGTTCTATGAAGGCCCT ........................................................................................................................................................................................((((..........(((((((((.((((((.((.........((((((...)))))))))))))))))))))))((.(((((.((((((.((.((((....((....))...)))).)).)))))))).))).))...)))).............................................................................................. ........................................................................................................................................................................................185..............................................................................................................................................330........................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesWT2() Testes Data. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................CTGCTGCATGGATACCGAAGCCTCA..................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................CGCACGGACAGGACTAACAAGTTCTA.......... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................CCTGCCATGCTGGACTCCACAGAG................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................CCTGCCATGCTGGACTCCACAGAGAGA............................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................AGATGTAAGCCGCACGGACAGGAC...................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................TACCGAAGCCTCATTGGTGGGTG........................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................CCTGCCATGCTGGACTCCACAGAgac................................................. | 26 | gac | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................ACGGACAGGACTAACAAGTTCTATGA....... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................CACGGACAGGACTAACAAGTTCTA.......... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |