| Gene: AI987944 | ID: uc009gll.1_intron_0_0_chr7_48629415_r.5p | SPECIES: mm9 |
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(4) OTHER.mut |
(4) PIWI.ip |
(4) PIWI.mut |
(1) TDRD1.ip |
(24) TESTES |
| AAGAATTCATATTGAAGAGAAGCCCGATGAATGGAACCAATGTGGTCAAGGTAATCTCCAAATACATAAAAGGACACATTCTGCACAGAAACCCTATGAATGTAATCAGTGTGGAAAAGCCTTCAGGCGGCACAATAGTCTCCAAGTACATAATAGAACACATACTGGAGAGAAACCCTACAAATGTGATCAATGTGATAAAGCCTTTACACAACAAGGTCATCTCCGAATTCATAATAGAACACATACT ......................................................((((((.........((((.....(((..(((.((................)).)))..)))...))))..((.(((......))).))......................))))))............................................................................... ...................................................52...............................................................................................................................181................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR014237(GSM319961) 10 dpp MILI-KO total. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................ACATAATAGAACACATACTGGAGAGAAACC......................................................................... | 30 | 1 | 5.00 | 5.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................ACATAATAGAACACATACTGGAGAGAAACCC........................................................................ | 31 | 1 | 3.00 | 3.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................ACATAATAGAACACATACTGGAGAGAAAC.......................................................................... | 29 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................ACAAATGTGATCAATGTGATAAAGCCTTTA......................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................TGATAAAGCCTTTACACAACAAGGTCATC.......................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TCTCCAAGTACATAATAGAACACATACTGG.................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................CATACTGGAGAGAAccat........................................................................ | 18 | ccat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................TCCAAATACATAAAAGGACACATTCTGCAC.................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................TGAATGTAATCAGTGTGGAAAAGCCTTCA............................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................ATACTGGAGAGAAACCCTca..................................................................... | 20 | ca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................AAAAGGACACATTCTGCACAGAAACC............................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................TGTAATCAGTGTGGAAAAGCCTTCAGGCGG........................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................GTGGAAAAGCCTTCAGGCGGCACAA................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................AAAGGACACATTCTGCACAGAAAC.............................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TAATAGAACACATACTGGAGAGAAACCC........................................................................ | 28 | 2 | 1.00 | 1.00 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - |
| ................................................................................................TGAATGTAATCAGTGTGGAAAAGCCTTCAGt........................................................................................................................... | 31 | t | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................TACTGGAGAGAAACCCTACAAATGTGATt........................................................... | 29 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................ACATAAAAGGACACATTCTGCACAGAAACC............................................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................ACATAATAGAACACATACTGGAGAGA............................................................................. | 26 | 3 | 0.67 | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.67 | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TAATAGAACACATACTGGAGAGAAACCCTA...................................................................... | 30 | 2 | 0.50 | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TACATAATAGAACACATACTGGAGAGA............................................................................. | 27 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................ATAGAACACATACTGGAGAGAAACCC........................................................................ | 26 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - |
| ...................................................................................................................................................ACATAATAGAACACATACTGGAGA............................................................................... | 24 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - |
| ...................................................................................................................................................ACATAATAGAACACATACTGGAGAGAA............................................................................ | 27 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - |
| ..............................................................................................................................................................................ACCCTACAAATGTGATCAATGTGATAAAGC.............................................. | 30 | 4 | 0.25 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................TATGAATGTAATCAGTGTGGAAAAGCCT................................................................................................................................ | 28 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - |
| ..............................................................................................TATGAATGTAATCAGTGTGGAAAAGC.................................................................................................................................. | 26 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - |
| .......................................................................................................................................................AATAGAACACATACTGGAGAGA............................................................................. | 22 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - |
| .....................................................................................................GTAATCAGTGTGGAAAAGCC................................................................................................................................. | 20 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | - |
| ...................................................................................................................................................................................ACAAATGTGATCAATGTGATA.................................................. | 21 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 |
| .................................................................................................................................................................ATACTGGAGAGAAACCCTACAAATGTG.............................................................. | 27 | 15 | 0.07 | 0.07 | - | 0.07 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AAGAATTCATATTGAAGAGAAGCCCGATGAATGGAACCAATGTGGTCAAGGTAATCTCCAAATACATAAAAGGACACATTCTGCACAGAAACCCTATGAATGTAATCAGTGTGGAAAAGCCTTCAGGCGGCACAATAGTCTCCAAGTACATAATAGAACACATACTGGAGAGAAACCCTACAAATGTGATCAATGTGATAAAGCCTTTACACAACAAGGTCATCTCCGAATTCATAATAGAACACATACT ......................................................((((((.........((((.....(((..(((.((................)).)))..)))...))))..((.(((......))).))......................))))))............................................................................... ...................................................52...............................................................................................................................181................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR014237(GSM319961) 10 dpp MILI-KO total. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) |
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| .....................................................................................................................................AGTCTCCAAGTACATggc................................................................................................... | 18 | ggc | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |