(1)
OTHER.ip
(6)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(28)
TESTES

Sense strand
AGCCCTGCCTAACCCTGGAGAAATCACCTCTGTCGGCAGACCTGAAGAAGGTGAACATGTTCTTAAAGCCAGACTCCTGACGACATGCCAGCCCTTTCCAACACAGAGTGTTGCTTTGTTTTGCTTTGTCTGTTCTGTTCTAAGAGTGACGGGGATGAAATACAGGGCTTTGCGCGTCCTGGGCATGCATTCATCACTGAACCATACCCCAATTCCATAGGAGGATTTTAAATAAACACTTCTAAGGCTA
.......................................................((((((.(((.((.....))..))).))))))..((((((...((((((...))))))...((((((((((((((...(((......)))..))))))).))))))).)))))).................................................................................
.......................................................56................................................................................................................170..............................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
............................................................................................................................................TAAGAGTGACGGGGATGAAATACAGG.................................................................................... 26 1 8.00 8.00 1.00 1.00 3.00 - - - - - - - - - - - 1.00 - 1.00 - - - - - - - - - - 1.00
.......................................................................................................................................TGTTCTAAGAGTGACGGGGATGAAATAC....................................................................................... 28 1 4.00 4.00 1.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - 1.00 - -
............................................................TCTTAAAGCCAGACTCCTGACGACATG................................................................................................................................................................... 27 1 4.00 4.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TTCTAAGAGTGACGGGGATGAAATAC....................................................................................... 26 1 3.00 3.00 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TACAGGGCTTTGCGCGTCCTGGGCATG............................................................... 27 1 3.00 3.00 - - - - - 3.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TGCTTTGTCTGTTCTGTTCTAAGAG........................................................................................................ 25 1 3.00 3.00 - - - - - - - - - 3.00 - - - - - - - - - - - - - - - - - -
...............TGGAGAAATCACCTCTGTCGGCAGACCT............................................................................................................................................................................................................... 28 1 3.00 3.00 - - - - 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - -
.....................AATCACCTCTGTCGGCAGACCT............................................................................................................................................................................................................... 22 1 3.00 3.00 - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - - -
............................TCTGTCGGCAGACCTGAAGAAGGTGAAC.................................................................................................................................................................................................. 28 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TTCTAAGAGTGACGGGGATGAAATACA...................................................................................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................TGTTCTAAGAGTGACGGGGATGAAATAt....................................................................................... 28 t 2.00 0.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............TGGAGAAATCACCTCTGTCGGCAGACC................................................................................................................................................................................................................ 27 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.......................................................................................................................TTTGCTTTGTCTGTTCTGTTCTAAGAGTGt..................................................................................................... 30 t 2.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - 1.00 - - - -
........................CACCTCTGTCGGCAGACCTG.............................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..................................................................AGCCAGACTCCTGACGACATGCCAGCC............................................................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................CATTCATCACTGAACCATACCCCAATTC................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.................................................................................................................................................................................................TCACTGAACCATACCCCAATTCCATAGG............................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................TGACGACATGCCAGCCCTTTCCAACAC.................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................AGAGTGACGGGGATGAAATACAGGGC.................................................................................. 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................TGTCTGTTCTGTTCTAAGAGTGACGGGt................................................................................................ 28 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................TGTTCTTAAAGCCAGACTCCTGACGAC...................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................AAGCCAGACTCCTGACGACATGCCAGCCC............................................................................................................................................................ 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TTCTTAAAGCCAGACTCCTGACGACATG................................................................................................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................CGTCCTGGGCATGCATTCATCACTGAACCATA............................................ 32 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................ACGACATGCCAGCCCTTTCCAACACAGA............................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TAGGAGGATTTTAAgcaa............... 18 gcaa 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TGCATTCATCACTGAACCATACCCCAAT..................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................CACTGAACCATACCCCAATTCCATAGGt............................ 28 t 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TGCATTCATCACTGAACCATACCCCAATTC................................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................TCATCACTGAACCATACCCCAATTCCAT................................ 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................CACCTCTGTCGGCAGACCTGAAGAAGGct..................................................................................................................................................................................................... 29 ct 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................TCTAAGAGTGACGGGGATGAAATACAGG.................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................CTTTGTCTGTTCTGTTCTAAGAttg...................................................................................................... 25 ttg 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.............................................................................................................................................................................................TTCATCACTGAACCATACCCCAATTCCATAG.............................. 31 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................TTCTAAGAGTGACGGGGATGAAATACAGt.................................................................................... 29 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................AGGAGGATTTTAAATAAACA............ 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..................................................................................................................................TGTTCTGTTCTAAGAGTGACGGGG................................................................................................ 24 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.........................................CTGAAGAAGGTGAACATGTTC............................................................................................................................................................................................ 21 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................GGGATGAAATACAGGGCTTTGCG............................................................................ 23 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
................................TCGGCAGACCTGAAGAAG........................................................................................................................................................................................................ 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...................................................................................................................................................................................TGGGCATGCATTCATCACTGAACCATACCC......................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
........................................................................................CAGCCCTTTCCAACACAGAGTGTTGCT....................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.............................................................................................................................TTGTCTGTTCTGTTCTAAGAGTGACGGt................................................................................................. 28 t 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................AAGCCAGACTCCTGACGACATGCCAG............................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TCACTGAACCATACCCCAATTCCATAGGA............................ 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................TTCTTAAAGCCAGACTCCTGACGACA..................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...............TGGAGAAATCACCTCTGTCGGCAGA.................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................AAAGCCAGACTCCTGACGACATGCCAGCgc............................................................................................................................................................ 30 gc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TAAGAGTGACGGGGATGAAATACAGGGC.................................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................CTAAGAGTGACGGGGATGAAATACAG..................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................ACCTCTGTCGGCAGACCTGAAGAAGGctc.................................................................................................................................................................................................... 29 ctc 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................ACGACATGCCAGCCCTTTCCAACACAGc............................................................................................................................................... 28 c 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
............................................................TCTTAAAGCCAGACTCCTGACGACATGCCA................................................................................................................................................................ 30 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................ACGACATGCCAGCCCTTTCCAAC.................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.........................ACCTCTGTCGGCAGACCTGAAGAAGGTG..................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TAAGAGTGACGGGGATGAAATACAGGG................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................TTAAAGCCAGACTCCTGACGACATGCCAGC.............................................................................................................................................................. 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................AAAGCCAGACTCCTGACGACATGCCAGCCC............................................................................................................................................................ 30 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................ATACAGGGCTTTGCGCGTCCTGGGCAT................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
AGCCCTGCCTAACCCTGGAGAAATCACCTCTGTCGGCAGACCTGAAGAAGGTGAACATGTTCTTAAAGCCAGACTCCTGACGACATGCCAGCCCTTTCCAACACAGAGTGTTGCTTTGTTTTGCTTTGTCTGTTCTGTTCTAAGAGTGACGGGGATGAAATACAGGGCTTTGCGCGTCCTGGGCATGCATTCATCACTGAACCATACCCCAATTCCATAGGAGGATTTTAAATAAACACTTCTAAGGCTA
.......................................................((((((.(((.((.....))..))).))))))..((((((...((((((...))))))...((((((((((((((...(((......)))..))))))).))))))).)))))).................................................................................
.......................................................56................................................................................................................170..............................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
..................................................................................................CACAGAGTGTTGCTTgta...................................................................................................................................... 18 gta 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -