| Gene: Ryr1 | ID: uc009gao.1_intron_4_0_chr7_29790671_r.3p | SPECIES: mm9 |
|
|
(6) OTHER.mut |
(1) OVARY |
(1) PIWI.ip |
(1) PIWI.mut |
(18) TESTES |
| TTCTAGTTGAGTCTAGATCCTGTCAGATGATGATCTGAACAATCGCGAGCCCATGCCTTCCTGTGACAGCCATGACACTACCCAGCTGTGAGAGGCAAGGCCCAGGGTTCTCTGCCACTGCTCTGTCTCCAGGCCCACCTAGTCCAGGCTTCCGGTAGGTGCTGTGGCTGTTAACTGGGCGGCCTGCCCCTTCTCCCCAGTGCTACCTGTTCCACATGTATGTGGGCGTCCGGGCCGGTGGAGGGATCGG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................TAGGTGCTGTGGCTGTTAACTGGGCGGC................................................................... | 28 | 1 | 17.00 | 17.00 | 15.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ...TAGTTGAGTCTAGATCCTGTCAGATG............................................................................................................................................................................................................................. | 26 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - |
| ...........................TGATGATCTGAACAATCGCGAGCCC...................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................CAGATGATGATCTGAACAATCGCGAGC........................................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TGAGTCTAGATCCTGTCAGATGATGAT........................................................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TCAGATGATGATCTGAACAATCGCGAG......................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TCTGAACAATCGCGAGCCCATGCCTTC.............................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................TTCTCCCCAGTGCTACCTGTTCCACATG................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................TGAACAATCGCGAGCCCATGCCTTCCTGTG......................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GTCCAGGCTTCCGGTAGGTGCTGTGGC.................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TCTGTCTCCAGGCCCACCTAGTCCAGGa..................................................................................................... | 28 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ......................TCAGATGATGATCTGAACAATCGCGAGa........................................................................................................................................................................................................ | 28 | a | 1.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............TAGATCCTGTCAGATGATGATCTGAA................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................ATGATCTGAACAATCGCGAGCCCATG................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..........................................TCGCGAGCCCATGCCTTCCTGTGACAG..................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................GGTAGGTGCTGTGGCTGTTAACTGGGC...................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................TTCTCCCCAGTGCTACCTGTTCCACA.................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................TGATGATCTGAACAATCGCGAGCCCAT.................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................................................AGCTGTGAGAGGCAAGGCCCAGGGT.............................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...TAGTTGAGTCTAGATCCTGTCAGATGA............................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................TCCACATGTATGTGGGCGTCCGGGCCGG............ | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .TCTAGTTGAGTCTAGATCCTGTCAGAT.............................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................TGATCTGAACAATCGCGAGCCCATGCCT................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...................................TGAACAATCGCGAGCCCATGCCTTC.............................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TTCTAGTTGAGTCTAGATCCTGTCAGATGATGATCTGAACAATCGCGAGCCCATGCCTTCCTGTGACAGCCATGACACTACCCAGCTGTGAGAGGCAAGGCCCAGGGTTCTCTGCCACTGCTCTGTCTCCAGGCCCACCTAGTCCAGGCTTCCGGTAGGTGCTGTGGCTGTTAACTGGGCGGCCTGCCCCTTCTCCCCAGTGCTACCTGTTCCACATGTATGTGGGCGTCCGGGCCGGTGGAGGGATCGG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................................CCCTTCTCCCCAGTGCTACCTGTTCCA.................................... | 27 | 1 | 23.00 | 23.00 | 13.00 | - | 2.00 | 1.00 | 3.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................CCCAGTGCTACCTGTTCCACATGTA.............................. | 25 | 1 | 14.00 | 14.00 | - | - | 2.00 | 5.00 | - | - | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................CCCCTTCTCCCCAGTGCTACCTGTTCCA.................................... | 28 | 1 | 12.00 | 12.00 | 8.00 | - | 1.00 | 1.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................CCTTCTCCCCAGTGCTACCTGTTCCA.................................... | 26 | 1 | 11.00 | 11.00 | - | 3.00 | - | 4.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................TCCCCAGTGCTACCTGTTCCACATG................................ | 25 | 1 | 8.00 | 8.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................CCCCAGTGCTACCTGTTCCACATGTA.............................. | 26 | 1 | 8.00 | 8.00 | - | - | 4.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................CTTCTCCCCAGTGCTACCTGTTCCA.................................... | 25 | 1 | 7.00 | 7.00 | - | - | 1.00 | - | - | 2.00 | - | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................................................TCTGTCTCCAGGCCCACCTAGTCCA........................................................................................................ | 25 | 1 | 4.00 | 4.00 | - | 1.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................TCTCCCCAGTGCTACCTGTTCCACATGTA.............................. | 29 | 1 | 4.00 | 4.00 | - | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................GCCCCTTCTCCCCAGTGCTACCTGTTCCA.................................... | 29 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................TCTCCCCAGTGCTACCTGTTCCA.................................... | 23 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................TCCCCAGTGCTACCTGTTCCACATGTA.............................. | 27 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..CTAGTTGAGTCTAGATCCTGTCAGA............................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................CATGCCTTCCTGTGACAGCCATGACA............................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................GCCCATGCCTTCCTGTGACAGCCATG................................................................................................................................................................................ | 26 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................GTCTCCAGGCCCACCTAGTCCA........................................................................................................ | 22 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................TCCCCAGTGCTACCTGTTCCA.................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ..................................................CCATGCCTTCCTGTGACAGCCATGACA............................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................CTTCTCCCCAGTGCTACCTGTTCCAa.................................... | 26 | a | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................TCTCTGCCACTGCTctga................................................................................................................................ | 18 | ctga | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................AGCCATGACACTACCCAGCTGTGAGAG............................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................TGTCTCCAGGCCCACCTAGTCCAGGC..................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................ATGCCTTCCTGTGACAGCCATGACA............................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................GATGATCTGAACAATCGCGAGCCCAT.................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................................................................................................................................................................CCCCAGTGCTACCTGTTCCACATGT............................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................GATGATCTGAACAATCGCGAGCCCA..................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................CAGGGTTCTCTGCCACTGCTCTGTC........................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................TCTCCCCAGTGCTACCTGTTCCACA.................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................CCCCAGTGCTACCTGTTCCACA.................................. | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................CCAGTGCTACCTGTTCCACATGTATG............................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....GTTGAGTCTAGATCCTGTCAGATGATGA......................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................CAGGGTTCTCTGCCACTGCTCTGTCTC......................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................CCCATGCCTTCCTGTGACAGCCAT................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................CAGGGTTCTCTGCCACTGCTCTGTCT.......................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................TGATCTGAACAATCGCGAGCCCA..................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................GGCCCAGGGTTCTCTGCCACTGCTa................................................................................................................................ | 25 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...................................................................................................................CACTGCTCTGTCTCCAGGCCCACCTA............................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...........................................................CCTGTGACAGCCATGACACTACCCA...................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................CCTTCCTGTGACAGCCAgt.................................................................................................................................................................................. | 19 | gt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..............................................................................................................TCTGCCACTGCTCTGTCTCCAGGCCCA................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................TGATGATCTGAACAATCGCGAGCCCA..................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................CAGTGCTACCTGTTCCACATGTAcg.............................. | 25 | cg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................................................................GCCACTGCTCTGTCTCCAGGCCCACCTA............................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................AACAATCGCGAGCCCATGCCTTCCTGa........................................................................................................................................................................................... | 27 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..............................................................................................GCAAGGCCCAGGGTTCTCTGCCACTG.................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................CTCCCCAGTGCTACCTGTTCCACATGTA.............................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...........TCTAGATCCTGTCAGA............................................................................................................................................................................................................................... | 16 | 8 | 0.12 | 0.12 | - | - | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - |