| Gene: Timm50 | ID: uc009fyg.1_intron_3_0_chr7_29092671_r | SPECIES: mm9 |
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(1) OTHER.mut |
(4) PIWI.ip |
(3) PIWI.mut |
(21) TESTES |
| AGCTTGCCCCTCTGTATGAAATAGTCATCTTCACATCAGAGACTGGCATGGTGAGTGAGGCTCTGAGGCAGCAATGACCCAGGTGTGTTGACAGACGCCCGGGCTGGACCTAGCCTCATCTCTCCTTCTCTCCGTCCCTGCAGACTGCATTTCCACTCATTGATAGTGTGGACCCTCACGGTTTCATCTCCTA ....................................................((((((((((...(((((((......((.(((((........))))).))))))..)))))))))).)))....................................................................... ..................................................51..........................................................................................143................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
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| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATGA.................................................................................................................... | 27 | 1 | 13.00 | 13.00 | 1.00 | 2.00 | 2.00 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATGAC................................................................................................................... | 28 | 1 | 12.00 | 12.00 | 3.00 | 2.00 | 1.00 | 1.00 | 1.00 | - | - | - | 1.00 | 1.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATGACC.................................................................................................................. | 29 | 1 | 11.00 | 11.00 | 1.00 | - | 1.00 | 1.00 | - | - | 3.00 | - | - | 1.00 | - | - | 1.00 | 1.00 | - | - | 1.00 | - | 1.00 | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAAT...................................................................................................................... | 25 | 1 | 9.00 | 9.00 | 3.00 | - | 2.00 | - | - | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...................................................TGAGTGAGGCTCTGAGGCAGCAATGAC................................................................................................................... | 27 | 1 | 7.00 | 7.00 | - | 2.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATG..................................................................................................................... | 26 | 1 | 6.00 | 6.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | 3.00 | - | - | - | - | 1.00 | - | - | - | - | - |
| ...........................TCTTCACATCAGAGACTGGCATGact............................................................................................................................................ | 26 | act | 4.00 | 0.00 | - | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATGACCC................................................................................................................. | 30 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................TCATTGATAGTGTGGACCCTCACGGTT.......... | 27 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATGt.................................................................................................................... | 27 | t | 3.00 | 6.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................TCATTGATAGTGTGGACCCTCACGGT........... | 26 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGC......................................................................................................................... | 22 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATGACt.................................................................................................................. | 29 | t | 2.00 | 12.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TCATCTTCACATCAGAGACTGGCATGact............................................................................................................................................ | 29 | act | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................CATCTTCACATCAGAGACTGGCATGact............................................................................................................................................ | 28 | act | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TCATCTTCACATCAGAGACTGGCATG............................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAA....................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................ATTGATAGTGTGGACCCTCACGGa........... | 24 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..............................................................................................................................................................ATTGATAGTGTGGACCCTCACGGTT.......... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TTGATAGTGTGGACCCTCACGGTTTC........ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ................................ACATCAGAGACTGGCATG............................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................CATTGATAGTGTGGACCCTCAC.............. | 22 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATGACCCA................................................................................................................ | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................TCACGGTTTCATCTCCTA | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTGAGGCTCTGAGGCAGCAATGACa.................................................................................................................. | 28 | a | 1.00 | 7.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATGAt................................................................................................................... | 28 | t | 1.00 | 13.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TTGATAGTGTGGACCCTCACGGTTTt........ | 26 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................GTGAGGCTCTGAGGCAGCA........................................................................................................................ | 19 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGTGAGGCTCTGAGGCAGCAATGACC.................................................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TTTCCACTCATTGATAGT.......................... | 18 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATtt.................................................................................................................... | 27 | tt | 1.00 | 9.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................GAGTGAGGCTCTGAGGCAGCAATGACC.................................................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................GTGAGGCTCTGAGGCAGCAA....................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATaa.................................................................................................................... | 27 | aa | 1.00 | 9.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCcttg..................................................................................................................... | 26 | cttg | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAt....................................................................................................................... | 24 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................GGTGAGTGAGGCTCTGAGGCAGCAATGACCCA................................................................................................................ | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATGACa.................................................................................................................. | 29 | a | 1.00 | 12.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGAGGCTCTGAGGCAGCAATa..................................................................................................................... | 26 | a | 1.00 | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................CATCTTCACATCAGAGACTGGCATGac............................................................................................................................................. | 27 | ac | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................CTCATTGATAGTGTGGACCCTCACGGT........... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AGCTTGCCCCTCTGTATGAAATAGTCATCTTCACATCAGAGACTGGCATGGTGAGTGAGGCTCTGAGGCAGCAATGACCCAGGTGTGTTGACAGACGCCCGGGCTGGACCTAGCCTCATCTCTCCTTCTCTCCGTCCCTGCAGACTGCATTTCCACTCATTGATAGTGTGGACCCTCACGGTTTCATCTCCTA ....................................................((((((((((...(((((((......((.(((((........))))).))))))..)))))))))).)))....................................................................... ..................................................51..........................................................................................143................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
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