(7)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(3)
PIWI.mut
(23)
TESTES

Sense strand
GATCTTGCCCCGCCTACTCATCCCCTCTTCTTCCAGCCCCGCCCCGCCCCTTGCTTTTCGGACCGCGACCCTCCCAGAGAGCGAGCGGGAAAGGAGAGCTGTTTAACCACAACGCGGGTCCTAGAGAAGGAACGCCATGGCGAGCTCTGGGCGAGTTGCCGTCTTGGAGCTCCATGGCGACCCCTTGCTGCCCCTCGCAGGAGCTGAGACGGGCGGAGTTGGTGGAGATTATCGTGGAGACCGAGGCACA
....................................................................................................................((((((.....)))...))).....((((((..((((......)).))..))))))..............................................................................
....................................................................................................................117.....................................................173...........................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR037897(GSM510433)
ovary_rep2. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
..........................................................................................................................................................GTTGCCGTCTTctgc................................................................................. 15 ctgc 31.00 0.00 18.00 13.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................TGGTGGAGATTATCGTGGAGACCGAGGC... 28 1 5.00 5.00 - - 2.00 1.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - -
................................................................................................................................................................................................................................GAGATTATCGTGGAGACCGAGGCAC. 25 1 4.00 4.00 1.00 - 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - -
.........................................................................................................................TAGAGAAGGAACGCCATGGCGAGCTCT...................................................................................................... 27 1 3.00 3.00 - - - - - 2.00 - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TGGAGATTATCGTGGAGACCGAGGC... 25 1 3.00 3.00 - - 1.00 - 2.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................GAGATTATCGTGGAGACCGAGGCA.. 24 1 3.00 3.00 1.00 - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TCGCAGGAGCTGAGACGGGCGGAGT............................... 25 1 2.00 2.00 - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................................GCCATGGCGAGCTCTGGGCGAG............................................................................................... 22 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TGGCGAGCTCTGGGCGAGTTGCCGTC....................................................................................... 26 1 2.00 2.00 - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - -
....................................................................................................GTTTAACCACAACGCGGG.................................................................................................................................... 18 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - -
............................................................................................................................................................................................................TGAGACGGGCGGAGTTGGTGGAGA...................... 24 1 2.00 2.00 - - - - - - - - - - - - 2.00 - - - - - - - - - - -
............................................................................................................................................................................................................TGAGACGGGCGGAGTTGGTGGAGAT..................... 25 1 2.00 2.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - -
..........................................................................................AAGGAGAGCTGTTTAACCACAACGCGG..................................................................................................................................... 27 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TCGCAGGAGCTGAGACGGGCGGAGTT.............................. 26 1 2.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - 1.00 - -
.........................................................................................................................................TGGCGAGCTCTGGGCGAGTTGCCGTCT...................................................................................... 27 1 2.00 2.00 - - - - - - - - 1.00 - 1.00 - - - - - - - - - - - - -
..................................................................................................................................AACGCCATGGCGAGCTCTGGGa.................................................................................................. 22 a 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.........................................................................................................................................................................................TGCTGCCCCTCGCAGGAGCTGAGACGGGC.................................... 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................GTGGAGATTATCGTGGAGACCGAGGCt.. 27 t 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................GCGAGCGGGAAAGGAGAG........................................................................................................................................................ 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..................................................................................................................CGGGTCCTAGAGAAGGAACGC................................................................................................................... 21 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................TGGTGGAGATTATCGTGGAGACCGAGG.... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................TGGTGGAGATTATCGTGGAGACCGAG..... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................GACGGGCGGAGTTGGTGGAGATTATC................. 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................GAGCTCTGGGCGAGTTGC........................................................................................... 18 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................CGCAGGAGCTGAGACGGGCGGAGTTGG............................ 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................AGGAGAGCTGTTTAACCACAACGCGGGTC.................................................................................................................................. 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................................CTTTTCGGACCGCGACCCTCCCAGAGAGC........................................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.................................................................................................................GCGGGTCCTAGAGAAGGAACGC................................................................................................................... 22 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................AGGAGAGCTGTTTAACCA............................................................................................................................................. 18 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.........................................................................................................................................TGGCGAGCTCTGGGCGAGTTGCCGTCTT..................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................AACGCCATGGCGAGCTCTGGGCGta............................................................................................... 25 ta 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.........................................................................................................................TAGAGAAGGAACGCCATGGCGAGCT........................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..................................................................................................................................AACGCCATGGCGAGCTCTGGGCGAGTTGCC.......................................................................................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TGGCGAGCTCTGGGCGAGTTGC........................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - -
............................................................................................................................................................................................................TGAGACGGGCGGAGTTGGTGGAGATTAT.................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TCGCAGGAGCTGAGACGGGCGGAGTTt............................. 27 t 1.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................TCTGGGCGAGTTGCCGTCTTGGAGC................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................GCAGGAGCTGAGACGGGCGGAGgtt............................. 25 gtt 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................AGCGGGAAAGGAGAGCTGTTTAACCACAA.......................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..............................................................................................................................................................................................................................TGGAGATTATCGTGGAGACCGAGGCA.. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................GAGATTATCGTGGAGACCGAGGCca. 25 ca 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................GAGCTCTGGGCGAGTTGCC.......................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - -
......................................................................................GGGAAAGGAGAGCTGTTTAACCACAAC......................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TGGCGAGCTCTGGGCGAG............................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................................................................................GCCATGGCGAGCTCTGGG................................................................................................... 18 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................GCGGGTCCTAGAGAAGGAACG.................................................................................................................... 21 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................AACGCGGGTCCTAGAGAAGGA....................................................................................................................... 21 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TCGCAGGAGCTGAGACGGGCGGAGTTGG............................ 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - -
............................................................................................................ACAACGCGGGTCCTAGAGA........................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..................................................................................................................................AACGCCATGGCGAGCTCTGGG................................................................................................... 21 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................GCGAGCGGGAAAGGAGAGCTG..................................................................................................................................................... 21 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................AGACGGGCGGAGTTGGTGGAGATTAT.................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................GCGAGCTCTGGGCGAGTT............................................................................................. 18 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - -
............................................................................................................................................................................................................TGAGACGGGCGGAGTTGGTGGAGATa.................... 26 a 1.00 2.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.............................................................................................................................................................................................................................GTGGAGATTATCGTGGAGACCGAGGC... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................ATGGCGAGCTCTGGGCGAGTTGCC.......................................................................................... 24 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...................................................................................................................GGGTCCTAGAGAAGGAACGC................................................................................................................... 20 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................ACCACAACGCGGGTCCTAG.............................................................................................................................. 19 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................................................................................................................CGGGTCCTAGAGAAGGAA...................................................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - -
............................................................................GAGAGCGAGCGGGAAAGGAGAGCTGTT................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................CGGGTCCTAGAGAAGGAACGCCA................................................................................................................. 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00
............................................................................................................................................................................................................TGAGACGGGCGGAGTTGGTGGAGATT.................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGAGACGGGCGGAGTTGGTGGAGAaa.................... 26 aa 1.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................AGAAGGAACGCCATGGCGAGCTCTGGGC.................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..........................................................................................................................................................GTTGCCGTCTTccgc................................................................................. 15 ccgc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................AAGGAGAGCTGTTTAACC.............................................................................................................................................. 18 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - -

Antisense strand
GATCTTGCCCCGCCTACTCATCCCCTCTTCTTCCAGCCCCGCCCCGCCCCTTGCTTTTCGGACCGCGACCCTCCCAGAGAGCGAGCGGGAAAGGAGAGCTGTTTAACCACAACGCGGGTCCTAGAGAAGGAACGCCATGGCGAGCTCTGGGCGAGTTGCCGTCTTGGAGCTCCATGGCGACCCCTTGCTGCCCCTCGCAGGAGCTGAGACGGGCGGAGTTGGTGGAGATTATCGTGGAGACCGAGGCACA
....................................................................................................................((((((.....)))...))).....((((((..((((......)).))..))))))..............................................................................
....................................................................................................................117.....................................................173...........................................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR037897(GSM510433)
ovary_rep2. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
...................................................................................................................................................TGGGCGAGTTGCCGTCTTGGAGCTCCA............................................................................ 27 1 2.00 2.00 - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - -
........................................................................................................................................................................................TTGCTGCCCCTCGCAGGA................................................ 18 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - -
....................................................................CCTCCCAGAGAGCGAGCGGGAAAGGc............................................................................................................................................................ 26 c 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................GAGCTCTGGGCGAGTTGCCGTCTTGGA.................................................................................. 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................CTCTGGGCGAGTTGCCGTCT...................................................................................... 20 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
............................TTCCAGCCCCGCCCCGaa............................................................................................................................................................................................................ 18 aa 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...............................TCCAGCCCCGCCCCG............................................................................................................................................................................................................ 15 17 0.06 0.06 0.06 - - - - - - - - - - - - - - - - - - - - - - -
.............................CTTCCAGCCCCGCCC.............................................................................................................................................................................................................. 15 19 0.05 0.05 - 0.05 - - - - - - - - - - - - - - - - - - - - - -